SMTL ID : 3fq3.1 (5 other biounits)

Crystal structure of inorganic phosphatase from brucella melitensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: N.97, T.98, R.99, R.138, Y.139 Chain C: F.66, Y.68 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.97, A:T.98, A:R.99, A:Y.139, A:Y.139, C:Y.68 Water bridges: A:R.138 Salt bridges: A:R.99, A:R.138 PO4.2: 5 residues within 4Å: Chain A: K.51, D.124, K.126, Y.163, K.164 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.124 Water bridges: A:K.51, A:K.51, A:D.92, A:D.124, A:K.126, A:K.126, A:Y.163, A:Y.163, A:K.164 Salt bridges: A:K.51, A:K.126, A:K.164 PO4.3: 7 residues within 4Å: Chain B: N.97, T.98, R.99, R.138, Y.139 Chain D: F.66, Y.68 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.97, B:T.98, B:R.99, B:Y.139 Salt bridges: B:R.99, B:R.138 PO4.4: 4 residues within 4Å: Chain B: K.51, D.124, K.126, K.164 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:D.124, B:Y.163, B:Y.163 Water bridges: B:K.51, B:K.51, B:K.51, B:S.121, B:K.126, B:K.126, B:K.164 Salt bridges: B:K.51, B:K.126, B:K.164 PO4.5: 7 residues within 4Å: Chain C: N.97, T.98, R.99, R.138, Y.139 Chain E: F.66, Y.68 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.97, C:T.98, C:T.98, C:R.99, C:Y.139, C:Y.139 Water bridges: C:R.99, C:R.138 Salt bridges: C:R.99, C:R.138 PO4.6: 5 residues within 4Å: Chain C: K.51, D.119, D.124, K.126, K.164 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.124 Water bridges: C:D.124, C:K.126, C:Y.163, C:K.164, C:K.164 Salt bridges: C:K.51, C:K.126, C:K.164 PO4.7: 7 residues within 4Å: Chain D: N.97, T.98, R.99, R.138, Y.139 Chain F: F.66, Y.68 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain F Hydrogen bonds: D:N.97, D:T.98, D:R.99, D:Y.139, F:Y.68 Water bridges: D:R.99, D:R.138, D:Y.139, F:Q.48 Salt bridges: D:R.99, D:R.138 PO4.8: 4 residues within 4Å: Chain D: K.51, D.124, K.126, K.164 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:D.124, D:Y.163 Water bridges: D:K.51, D:K.51, D:K.126, D:K.126, D:K.164 Salt bridges: D:K.51, D:K.126, D:K.164 PO4.9: 7 residues within 4Å: Chain A: F.66, Y.68 Chain E: N.97, T.98, R.99, R.138, Y.139 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:N.97, E:T.98, E:R.99, E:Y.139 Water bridges: E:T.98, E:T.98, E:Y.139 Salt bridges: E:R.99, E:R.138 PO4.10: 4 residues within 4Å: Chain E: K.51, D.124, K.126, K.164 13 PLIP interactions: 13 interactions with chain E Water bridges: E:D.119, E:S.121, E:D.124, E:D.124, E:D.124, E:K.126, E:K.126, E:K.126, E:Y.163, E:K.170 Salt bridges: E:K.51, E:K.126, E:K.164 PO4.11: 7 residues within 4Å: Chain B: F.66, Y.68 Chain F: N.97, T.98, R.99, R.138, Y.139 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:N.97, F:T.98, F:R.99, F:Y.139, F:Y.139, B:Y.68 Water bridges: F:R.138 Salt bridges: F:R.99, F:R.138 PO4.12: 6 residues within 4Å: Chain F: K.51, Y.77, D.92, D.124, K.126, K.164 10 PLIP interactions: 10 interactions with chain F Water bridges: F:D.89, F:D.89, F:S.121, F:D.124, F:D.124, F:K.126, F:K.164 Salt bridges: F:K.51, F:K.126, F:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal structure of inorganic phosphatase from brucella melitensis. To be Published

Release Date

2009-01-20

Peptides

Inorganic pyrophosphatase:Bacterial/Archaeal inorganic pyrophosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Inorganic pyrophosphatase:Bacterial/Archaeal inorganic pyrophosphatase

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