SMTL ID : 3fyd.1

Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.136, R.191 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.136, A:R.136 Salt bridges: A:R.136 SO4.2: 2 residues within 4Å: Chain A: K.199, K.203 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.199, A:K.203 SO4.3: 4 residues within 4Å: Chain A: N.251, N.254, E.255, R.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.181, A:E.181, A:N.251, A:N.254 Salt bridges: A:R.258 SO4.4: 3 residues within 4Å: Chain A: Y.119, K.123, K.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.119 Salt bridges: A:K.123, A:K.152 SO4.5: 2 residues within 4Å: Chain A: N.198, K.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.198 Salt bridges: A:K.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pulicherla, N. et al., Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases. J.Mol.Biol. (2009)

Release Date

2009-06-30

Peptides

Probable dimethyladenosine transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable dimethyladenosine transferase