SMTL ID : 3fyv.1

Staph. aureus DHFR complexed with NADPH and AR-102

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: V.6, A.7, I.14, G.15, N.18, Q.19, L.20, W.22, G.43, R.44, K.45, T.46, L.62, T.63, S.64, H.77, I.79, F.92, G.93, G.94, Q.95, T.96, L.97, E.100, T.121 Ligands: XCF.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:T.46 Hydrogen bonds: A:A.7, A:I.14, A:N.18, A:N.18, A:R.44, A:K.45, A:T.46, A:T.63, A:S.64, A:D.65, A:G.94, A:Q.95, A:T.96, A:L.97, A:E.100, A:T.121 Water bridges: A:N.18, A:N.18, A:I.79, A:T.121 Salt bridges: A:R.44

1 x XCF: 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine(Non-covalent)

XCF.2: 10 residues within 4Å: Chain A: L.5, V.6, A.7, L.20, D.27, L.28, V.31, F.92, T.111 Ligands: NDP.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.92, A:F.92 Hydrogen bonds: A:L.5, A:V.6, A:A.7, A:L.20, A:T.111 Water bridges: A:H.30 Salt bridges: A:D.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oefner, C. et al., Inhibitory properties and X-ray crystallographic study of the binding of AR-101, AR-102 and iclaprim in ternary complexes with NADPH and dihydrofolate reductase from Staphylococcus aureus. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-08-04

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Dihydrofolate reductase

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