SMTL ID : 3g0s.1

Dihydrodipicolinate synthase from Salmonella typhimurium LT2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: V.159, P.160, S.161, A.187, T.188 Ligand excluded by PLIP CL.3: 7 residues within 4Å: Chain A: A.32, V.64, G.67, T.68, L.125, K.185, I.227 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: V.159, P.160, S.161, A.187, T.188 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain B: A.32, V.64, T.68, L.125, K.185, I.227 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: V.159, P.160, S.161, A.187, T.188 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain C: A.32, V.64, G.67, T.68, L.125, K.185, I.227 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain D: V.159, P.160, S.161, A.187, T.188 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain D: A.32, V.64, T.68, L.125, K.185, I.227 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: S.72, A.73, G.102, V.127, Y.130 Chain B: N.104, Y.131 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.104, B:N.104, A:S.72, A:S.72 Water bridges: B:Y.131, A:G.102, A:G.102, A:V.127 GOL.8: 7 residues within 4Å: Chain A: N.104, Y.131 Chain B: S.72, A.73, G.102, V.127, Y.130 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:N.104, A:N.104, B:S.72, B:S.72 Water bridges: A:Y.131, A:Y.131, B:G.102, B:V.127, B:Y.130 GOL.12: 7 residues within 4Å: Chain C: S.72, A.73, G.102, V.127, Y.130 Chain D: N.104, Y.131 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.72, C:S.72, D:N.104, D:N.104 Water bridges: C:G.102, C:G.102, C:V.127, C:Y.130 GOL.16: 7 residues within 4Å: Chain C: N.104, Y.131 Chain D: S.72, A.73, G.102, V.127, Y.130 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:N.104, C:N.104, D:S.72, D:S.72 Water bridges: C:Y.131, D:S.72, D:G.102, D:V.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal structure of dihydrodipicolinate synthase from Salmonella typhimurium LT2. To be Published

Release Date

2009-02-10

Peptides

Dihydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Dihydrodipicolinate synthase