SMTL ID : 3g16.1

Crystal structure of protein of unknown function with cystatin-like fold (YP_001022489.1) from METHYLOBIUM PETROLEOPHILUM PM1 at 1.45 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 13 residues within 4Å: Chain A: Y.19, Y.20, C.23, H.41, F.43, Y.48, W.62, W.73, W.91, H.93, L.102, E.106, Y.124 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.19, A:Y.20, A:H.41, A:Y.48, A:W.62, A:W.73, A:H.93, A:Y.124, A:Y.124 UNL.7: 12 residues within 4Å: Chain B: Y.20, C.23, H.41, F.43, Y.48, W.62, W.73, W.91, H.93, L.102, E.106, Y.124 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.48, B:Y.48, B:W.62, B:W.91, B:Y.124 Water bridges: B:Y.19, B:Y.19, A:Q.128

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.148, V.149, T.150 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.150, S.151, K.154 Ligands: GOL.6 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: S.8, R.9 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.148, V.149, T.150 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: D.76 Chain B: R.145, G.146, Y.147 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.148, A:I.75, A:D.76, A:D.76 GOL.6: 4 residues within 4Å: Chain A: R.134, K.154 Chain B: D.99 Ligands: CL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.134, A:R.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of protein of unknown function with cystatin-like fold (YP_001022489.1) from METHYLOBIUM PETROLEOPHILUM PM1 at 1.45 A resolution. To be published

Release Date

2009-02-17

Peptides

uncharacterized protein with cystatin-like fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

uncharacterized protein with cystatin-like fold