- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 7 x NA: SODIUM ION(Non-functional Binders)
NA.2: 7 residues within 4Å:- Chain A: Q.248, G.268, T.269, G.270, F.272
- Ligands: GOL.1, PO4.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.248, A:T.269, A:G.270, A:G.270
NA.3: 4 residues within 4Å:- Chain A: Q.25, F.455, W.456
- Ligands: PO4.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.455
NA.10: 6 residues within 4Å:- Chain B: G.14, T.15, T.16, S.17, T.269
- Ligands: PO4.13
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.15, B:T.16, B:S.17, B:T.269, B:T.269
- Water bridges: B:T.269
NA.11: 2 residues within 4Å:- Chain B: R.323
- Ligands: PO4.5
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.323
NA.12: 4 residues within 4Å:- Chain B: G.96, K.174, K.178
- Ligands: PO4.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.174
NA.20: 7 residues within 4Å:- Chain D: G.14, T.15, T.16, S.17, R.19, T.269
- Ligands: PO4.22
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:T.15, D:T.16, D:T.16, D:S.17, D:R.19, D:R.19
NA.21: 3 residues within 4Å:- Chain C: K.375
- Chain D: R.323
- Ligands: PO4.24
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.375
- 13 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 7 residues within 4Å:- Chain A: G.14, T.15, D.247, G.268, T.269
- Ligands: GOL.1, NA.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.15, A:T.16, A:D.247, A:T.269
- Water bridges: A:D.247, A:T.269
PO4.5: 4 residues within 4Å:- Chain A: Y.334, K.375
- Chain B: R.323
- Ligands: NA.11
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:K.375
- Salt bridges: A:K.375, B:R.323
PO4.6: 7 residues within 4Å:- Chain A: S.340, T.341, R.380, E.384, Y.388, F.423, L.484
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:T.341, A:E.384, A:E.480, A:E.480
- Water bridges: A:S.340, A:T.341, A:T.341
- Salt bridges: A:R.380
PO4.7: 6 residues within 4Å:- Chain A: Q.25, W.456, E.457, S.458, D.461
- Ligands: NA.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.25, A:E.457, A:E.457, A:E.457, A:S.458
PO4.8: 6 residues within 4Å:- Chain A: W.173, K.174, G.177, K.178, Y.232, H.233
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.173
- Salt bridges: A:K.174, A:H.233
PO4.13: 7 residues within 4Å:- Chain B: G.14, T.15, D.247, G.268, T.269
- Ligands: GOL.9, NA.10
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:T.15, B:T.15, B:T.16, B:T.269, B:T.269, B:T.269
- Water bridges: B:D.247, B:Q.248, B:Q.248
PO4.14: 5 residues within 4Å:- Chain B: K.174, G.177, Y.232, H.233
- Ligands: NA.12
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.173, B:G.177, B:Y.232
- Water bridges: B:W.55
- Salt bridges: B:K.174, B:H.233
PO4.15: 7 residues within 4Å:- Chain B: S.340, T.341, R.380, E.384, Y.388, F.423, L.484
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.341, B:Y.388, B:E.480, B:E.480
- Water bridges: B:T.341
- Salt bridges: B:R.380
PO4.16: 3 residues within 4Å:- Chain A: R.323
- Chain B: Y.334, K.375
4 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:Y.334
- Salt bridges: B:K.375, A:R.323
- Water bridges: C:N.326
PO4.18: 7 residues within 4Å:- Chain C: G.14, T.15, T.16, R.19, G.268, T.269
- Ligands: GOL.17
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.15, C:T.15, C:T.16, C:R.19, C:T.269, C:T.269
PO4.22: 6 residues within 4Å:- Chain D: G.14, T.15, G.268, T.269
- Ligands: GOL.19, NA.20
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:T.15, D:T.15, D:T.269, D:T.269
- Salt bridges: D:R.19
PO4.23: 4 residues within 4Å:- Chain C: R.323
- Chain D: Y.334, R.337, K.375
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Y.334, D:R.337
- Water bridges: D:K.375
- Salt bridges: D:K.375, C:R.323
PO4.24: 4 residues within 4Å:- Chain C: Y.334, K.375
- Chain D: R.323
- Ligands: NA.21
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Y.334
- Salt bridges: C:K.375, D:R.323
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 1.9 Angstrom Crystal Structure of Glycerol Kinase (glpK) from Staphylococcus aureus in Complex with Glycerol. TO BE PUBLISHED
- Release Date
- 2009-02-17
- Peptides
- Glycerol kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 7 x NA: SODIUM ION(Non-functional Binders)
- 13 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 1.9 Angstrom Crystal Structure of Glycerol Kinase (glpK) from Staphylococcus aureus in Complex with Glycerol. TO BE PUBLISHED
- Release Date
- 2009-02-17
- Peptides
- Glycerol kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D