- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
TYD.2: 12 residues within 4Å:- Chain A: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.1
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:K.14, A:T.97, A:R.108, A:N.118
- Water bridges: A:K.14, A:Y.55
- Salt bridges: A:H.58, A:R.91, A:R.108
- pi-Stacking: A:Y.63
TYD.4: 12 residues within 4Å:- Chain B: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.3
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:I.115
- Hydrogen bonds: B:K.14, B:T.97, B:R.108, B:R.116, B:N.118
- Water bridges: B:K.14, B:Y.55
- Salt bridges: B:H.58, B:R.91, B:R.108
- pi-Stacking: B:Y.63
TYD.6: 12 residues within 4Å:- Chain C: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.5
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:Y.63
- Hydrogen bonds: C:K.14, C:T.97, C:R.108, C:R.116, C:N.118
- Salt bridges: C:H.58, C:R.91, C:R.108
- pi-Stacking: C:Y.63
TYD.8: 12 residues within 4Å:- Chain D: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.7
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:K.14, D:T.97, D:T.97, D:R.108, D:N.118
- Water bridges: D:K.14, D:Y.55
- Salt bridges: D:H.58, D:R.91, D:R.108
- pi-Stacking: D:Y.63
TYD.10: 12 residues within 4Å:- Chain E: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.9
13 PLIP interactions:13 interactions with chain E- Hydrophobic interactions: E:I.115
- Hydrogen bonds: E:K.14, E:T.97, E:T.97, E:R.108, E:R.116, E:N.118
- Water bridges: E:K.14, E:Y.55
- Salt bridges: E:H.58, E:R.91, E:R.108
- pi-Stacking: E:Y.63
TYD.12: 12 residues within 4Å:- Chain F: K.14, Y.55, H.58, Y.63, L.67, R.91, T.97, R.108, I.115, R.116, N.118
- Ligands: MG.11
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:Y.63
- Hydrogen bonds: F:K.14, F:R.108, F:R.116, F:N.118
- Salt bridges: F:H.58, F:R.91, F:R.108
- pi-Stacking: F:Y.63
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C