SMTL ID : 3g4x.1

Crystal Structure of NiSOD Y9F mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-hexamer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: H.1, C.2, D.3, C.6 Ligands: CL.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.2, A:C.6 NI.3: 5 residues within 4Å: Chain B: H.1, C.2, D.3, C.6 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.2, B:C.6 NI.5: 5 residues within 4Å: Chain C: H.1, C.2, D.3, C.6 Ligands: CL.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.2, C:C.6 NI.7: 5 residues within 4Å: Chain D: H.1, C.2, D.3, C.6 Ligands: CL.8 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.2, D:C.6 NI.9: 5 residues within 4Å: Chain E: H.1, C.2, D.3, C.6 Ligands: CL.10 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:C.2, E:C.6 NI.11: 5 residues within 4Å: Chain F: H.1, C.2, D.3, C.6 Ligands: CL.12 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:C.2, F:C.6

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: H.1, D.3, P.5, C.6, F.9 Ligands: NI.1 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain B: H.1, D.3, P.5, C.6, G.7, F.9 Ligands: NI.3 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain C: H.1, D.3, P.5, C.6, G.7, F.9 Ligands: NI.5 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain D: H.1, D.3, P.5, C.6, F.9 Ligands: NI.7 Ligand excluded by PLIP CL.10: 7 residues within 4Å: Chain E: H.1, D.3, P.5, C.6, G.7, F.9 Ligands: NI.9 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain F: H.1, D.3, P.5, C.6, G.7, F.9 Ligands: NI.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herbst, R.W. et al., Role of conserved tyrosine residues in NiSOD catalysis: a case of convergent evolution. Biochemistry (2009)

Release Date

2009-04-28

Peptides

Superoxide dismutase [Ni]: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Superoxide dismutase [Ni]

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