SMTL ID : 3g5a.1 (5 other biounits)

Crystal Structure of Candida glabrata FMN Adenylyltransferase in complex with FMN and ATP analog AMPCPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 21 residues within 4Å: Chain A: S.64, Y.65, N.66, G.68, K.69, D.70, C.71, V.110, F.111, I.112, H.114, M.147, I.166, G.167, Y.220, T.225, S.226, L.227, E.300 Ligands: FMN.2, MG.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.64, A:N.66, A:K.69, A:D.70, A:C.71, A:I.112, A:I.112, A:G.167, A:G.167, A:L.227, A:E.300 Water bridges: A:G.68, A:D.70, A:H.114, A:R.169, A:R.169, A:R.301 Salt bridges: A:K.69

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 11 residues within 4Å: Chain A: T.146, M.147, F.151, I.164, I.166, T.184, D.185, W.188, F.191, R.193 Ligands: APC.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.151, A:I.164, A:I.166, A:W.188, A:W.188 Hydrogen bonds: A:M.147, A:D.185, A:D.185, A:D.185, A:R.193 Water bridges: A:A.148, A:N.187, A:N.187, A:R.193 pi-Stacking: A:W.188, A:W.188

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: K.69, D.70, D.172 Ligands: APC.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.70, H2O.1, H2O.2, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huerta, C. et al., Structure and mechanism of a eukaryotic FMN adenylyltransferase. J.Mol.Biol. (2009)

Release Date

2009-05-26

Peptides

FMN adenylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FMN adenylyltransferase

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