SMTL ID : 3g64.2 (1 other biounit)

Crystal structure of putative enoyl-CoA hydratase from Streptomyces coelicolor A3(2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: P.167 Ligands: SO4.4 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain B: L.235 Chain C: L.235 Ligands: SO4.5 No protein-ligand interaction detected (PLIP) ZN.9: 2 residues within 4Å: Chain D: P.167 Ligands: SO4.12 No protein-ligand interaction detected (PLIP) ZN.10: 3 residues within 4Å: Chain E: L.235 Chain F: L.235 Ligands: SO4.13 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: H.121, D.141, G.203, R.204, A.205, D.206 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.141, A:D.141, A:G.203, A:A.205, A:D.206, A:D.206 Water bridges: A:G.71, A:G.203, A:E.207 GOL.6: 4 residues within 4Å: Chain B: R.152, D.183, T.184 Ligands: EDO.7 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.152, B:R.152, B:D.183, B:T.184, B:T.184, B:T.184 Water bridges: B:R.186, A:R.215 GOL.8: 6 residues within 4Å: Chain C: H.121, D.141, G.203, R.204, A.205, D.206 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.141, C:D.141, C:G.203, C:A.205, C:D.206, C:D.206, C:D.206 Water bridges: C:G.71 GOL.11: 6 residues within 4Å: Chain D: H.121, D.141, G.203, R.204, A.205, D.206 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.141, D:G.203, D:A.205, D:D.206 Water bridges: D:G.71, D:G.203, D:E.207 GOL.14: 4 residues within 4Å: Chain E: R.152, D.183, T.184 Ligands: EDO.15 8 PLIP interactions: 7 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:R.152, E:R.152, E:D.183, E:D.183, E:T.184, E:T.184 Water bridges: E:R.186, D:R.215 GOL.16: 6 residues within 4Å: Chain F: H.121, D.141, G.203, R.204, A.205, D.206 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:D.141, F:G.203, F:A.205, F:D.206, F:D.206 Water bridges: F:G.71, F:H.121

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 10 residues within 4Å: Chain A: V.169, V.170, G.171 Chain B: V.169, V.170, G.171 Chain C: V.169, V.170, G.171 Ligands: ZN.1 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: A:V.170, B:V.169, C:V.169 SO4.5: 10 residues within 4Å: Chain A: L.235, D.236, M.237 Chain B: R.168, L.235, D.236, M.237 Chain C: L.235, D.236 Ligands: ZN.2 9 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C, 4 interactions with chain B Water bridges: A:L.235, A:D.236, C:R.168, C:D.236, C:D.236, B:D.236, B:D.236 Hydrogen bonds: B:R.168, B:D.236 SO4.12: 10 residues within 4Å: Chain D: V.169, V.170, G.171 Chain E: V.169, V.170, G.171 Chain F: V.169, V.170, G.171 Ligands: ZN.9 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F, 1 interactions with chain D Hydrogen bonds: E:V.169, F:V.169, D:V.170 SO4.13: 10 residues within 4Å: Chain D: L.235, D.236, M.237 Chain E: R.168, L.235, D.236, M.237 Chain F: L.235, D.236 Ligands: ZN.10 6 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E, 2 interactions with chain F Water bridges: D:R.168, D:L.235, F:R.168, F:D.236 Hydrogen bonds: E:R.168, E:D.236

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain B: R.145, T.184, R.186 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.186, B:R.186 EDO.15: 4 residues within 4Å: Chain E: R.145, T.184, R.186 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.184, E:R.186, E:R.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Putative Enoyl-CoA Hydratase from Streptomyces coelicolor A3(2). To be Published

Release Date

2009-03-03

Peptides

Putative enoyl-CoA hydratase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Putative enoyl-CoA hydratase

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