SMTL ID : 3gcf.5 (4 other biounits)

Terminal oxygenase of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.189, H.193, D.337 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.189, A:H.193, A:D.337, A:D.337, H2O.9 FE2.6: 3 residues within 4Å: Chain B: H.189, H.193, D.337 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.193, B:D.337, B:D.337, H2O.16, H2O.20 FE2.12: 3 residues within 4Å: Chain C: H.189, H.193, D.337 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.189, C:H.193, C:D.337, H2O.26, H2O.29

3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 9 residues within 4Å: Chain A: C.75, H.77, R.78, V.80, C.96, Y.98, H.99, G.100, W.101 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.75, A:H.77, A:C.96, A:H.99 FES.7: 9 residues within 4Å: Chain B: C.75, H.77, R.78, V.80, C.96, Y.98, H.99, G.100, W.101 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.75, B:H.77, B:C.96, B:H.99 FES.13: 9 residues within 4Å: Chain C: C.75, H.77, R.78, V.80, C.96, Y.98, H.99, G.100, W.101 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.75, C:H.77, C:C.96, C:H.99

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: N.224, K.227, R.376 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.194, N.195 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: K.260 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: N.224, K.227, R.376 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.194, N.195 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: K.260 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: V.52, T.53, E.299 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain C: N.224, K.227, R.376 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain C: R.194, N.195 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inoue, K. et al., Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenase. J.Mol.Biol. (2009)

Release Date

2009-09-15

Peptides

Terminal oxygenase component of carbazole 1,9a-dioxygenase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

Terminal oxygenase component of carbazole 1,9a-dioxygenase

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