SMTL ID : 3gdc.1

Crystal structure of multicopper oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: P.87, H.88, C.133, Q.135, H.141, L.146 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.88, A:C.133, A:H.141 CU.2: 3 residues within 4Å: Chain A: H.93, H.132 Chain C: H.271 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.271, A:H.93, A:H.132, H2O.6 CU.3: 5 residues within 4Å: Chain A: H.222, H.224 Chain B: H.91, H.93 Ligands: CU.7 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.222, B:H.91 CU.4: 4 residues within 4Å: Chain A: H.224, M.267, H.269 Chain B: H.134 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.134, A:H.224, A:H.269, H2O.6 CU.6: 6 residues within 4Å: Chain B: P.87, H.88, C.133, Q.135, H.141, L.146 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.88, B:C.133, B:H.141 CU.7: 4 residues within 4Å: Chain A: H.271 Chain B: H.93, H.132 Ligands: CU.3 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.93, B:H.132, A:H.271, H2O.6 CU.8: 4 residues within 4Å: Chain B: H.222, H.224 Chain C: H.91, H.93 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.222, C:H.91 CU.9: 3 residues within 4Å: Chain B: H.224, H.269 Chain C: H.134 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.224, B:H.269, C:H.134, H2O.16 CU.11: 4 residues within 4Å: Chain A: H.91, H.93 Chain C: H.222, H.224 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.91, C:H.222 CU.12: 4 residues within 4Å: Chain A: H.134 Chain C: H.224, M.267, H.269 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.224, C:H.269, A:H.134, H2O.6 CU.13: 6 residues within 4Å: Chain C: P.87, H.88, C.133, Q.135, H.141, L.146 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.88, C:C.133, C:H.141 CU.14: 3 residues within 4Å: Chain B: H.271 Chain C: H.93, H.132 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.93, C:H.132, B:H.271

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: N.173, D.175, G.176, D.179, E.181 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.175, A:G.176, A:D.179, A:D.179, A:E.181 CA.10: 5 residues within 4Å: Chain B: N.173, D.175, G.177, D.179, E.181 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.175, B:G.177, B:D.179, B:D.179, B:E.181 CA.15: 5 residues within 4Å: Chain C: N.173, D.175, G.176, D.179, E.181 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.175, C:G.176, C:D.179, C:D.179, C:E.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MacPherson, I.S. et al., A trimeric multicopper oxidase provides an evolutionary link to nitrite reductase. To be Published

Release Date

2010-03-09

Peptides

Multicopper oxidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Multicopper oxidase