- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 8 residues within 4Å:- Chain A: Q.84, R.85, E.86, W.105, Y.137, D.247, Q.248, F.272
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.85, A:R.85, A:E.86, A:D.247, A:Q.248
GOL.8: 9 residues within 4Å:- Chain B: T.15, R.85, E.86, W.105, Y.137, R.190, D.247, Q.248, F.272
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.85, B:R.85, B:Y.137, B:R.190, B:D.247, B:Q.248
GOL.12: 10 residues within 4Å:- Chain C: T.15, Q.84, R.85, E.86, W.105, Y.137, D.247, Q.248, F.272
- Ligands: ADP.11
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.85, C:R.85, C:E.86, C:Y.137, C:D.247, C:Q.248
GOL.16: 10 residues within 4Å:- Chain D: T.15, Q.84, R.85, E.86, W.105, Y.137, R.190, D.247, Q.248, F.272
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:T.15, D:T.15, D:R.85, D:R.85, D:Y.137, D:Y.137, D:R.190, D:D.247, D:Q.248
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 3 residues within 4Å:- Chain A: R.323
- Chain B: Y.334, K.375
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.334
- Salt bridges: B:K.375, A:R.323
PO4.4: 3 residues within 4Å:- Chain A: Y.334, K.375
- Chain B: R.323
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:K.375, B:R.323
PO4.5: 7 residues within 4Å:- Chain A: W.173, K.174, G.177, K.178, I.230, Y.232, H.233
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.174, A:H.233
PO4.9: 6 residues within 4Å:- Chain B: K.174, G.177, K.178, I.230, Y.232, H.233
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.232
- Salt bridges: B:K.174, B:K.178, B:H.233
PO4.13: 6 residues within 4Å:- Chain C: K.174, G.177, K.178, I.230, Y.232, H.233
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.232
- Water bridges: C:K.174, C:K.178
- Salt bridges: C:K.174, C:H.233
PO4.17: 3 residues within 4Å:- Chain C: R.323
- Chain D: Y.334, K.375
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:Y.334, C:R.323
- Salt bridges: D:K.375, C:R.323
PO4.18: 4 residues within 4Å:- Chain C: Y.334, R.337, K.375
- Chain D: R.323
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.337
- Salt bridges: C:K.375, D:R.323
PO4.19: 6 residues within 4Å:- Chain D: K.174, G.177, K.178, I.230, Y.232, H.233
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.232
- Water bridges: D:K.174
- Salt bridges: D:K.174, D:H.233
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain A: S.340, T.341, R.380, E.384
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain B: S.340, T.341, E.384
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain C: S.340, T.341, R.380, E.384, L.484
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain D: S.340, T.341, R.380, E.384
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 2.7 Angstrom Crystal Structure of Glycerol Kinase (glpK) from Staphylococcus aureus in Complex with ADP and Glycerol. To be Published
- Release Date
- 2009-03-24
- Peptides
- Glycerol kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minasov, G. et al., 2.7 Angstrom Crystal Structure of Glycerol Kinase (glpK) from Staphylococcus aureus in Complex with ADP and Glycerol. To be Published
- Release Date
- 2009-03-24
- Peptides
- Glycerol kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D