SMTL ID : 3ged.1

Fingerprint and Structural Analysis of a Apo SCOR enzyme from Clostridium thermocellum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.135, G.176, W.177 Chain D: D.238 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.135, A:G.176, D:D.238 Water bridges: A:I.178 GOL.5: 5 residues within 4Å: Chain B: R.135, G.176, W.177 Chain C: Y.235, D.238 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:D.238, B:R.135 Water bridges: C:D.238, B:G.176, B:I.178 GOL.8: 4 residues within 4Å: Chain B: D.238 Chain C: R.135, G.176, W.177 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.135, C:G.176, B:D.238 Water bridges: C:I.178 GOL.12: 5 residues within 4Å: Chain A: Y.235, D.238 Chain D: R.135, G.176, W.177 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:R.135, A:D.238 Water bridges: D:G.176, D:I.178, A:D.238

6 x THJ: THIOSULFATE(Non-covalent)

THJ.2: 7 residues within 4Å: Chain A: G.9, H.12, I.34, A.83, C.84, R.85, V.105 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.84, A:R.85 Water bridges: A:R.38, A:R.38 Salt bridges: A:H.12, A:R.85 THJ.3: 4 residues within 4Å: Chain A: K.16, D.41, F.42, R.46 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.16, A:R.46 THJ.6: 6 residues within 4Å: Chain B: G.9, H.12, I.34, A.83, C.84, R.85 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:C.84, B:R.85 Water bridges: B:R.38, B:R.38 Salt bridges: B:H.12, B:R.85 THJ.9: 7 residues within 4Å: Chain C: G.9, H.12, I.34, A.83, C.84, R.85, V.105 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:C.84, C:R.85 Water bridges: C:R.38, C:R.38 Salt bridges: C:H.12, C:R.85 THJ.10: 4 residues within 4Å: Chain C: K.16, D.41, F.42, R.46 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.16, C:R.46 THJ.13: 6 residues within 4Å: Chain D: G.9, H.12, I.34, A.83, C.84, R.85 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:C.84, D:R.85 Water bridges: D:R.38, D:R.38 Salt bridges: D:H.12, D:R.85

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: A.43, R.46, L.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.43, A:R.46 Water bridges: A:E.45 NA.7: 3 residues within 4Å: Chain B: A.43, R.46, L.49 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.46, B:R.46 Water bridges: B:E.45 NA.11: 3 residues within 4Å: Chain C: A.43, R.46, L.49 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.46, C:L.49 Water bridges: C:E.45 NA.14: 3 residues within 4Å: Chain D: A.43, R.46, L.49 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:A.43, D:R.46 Water bridges: D:E.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huether, R. et al., Sequence fingerprint and structural analysis of the SCOR enzyme A3DFK9 from Clostridium thermocellum. Proteins (2010)

Release Date

2009-03-17

Peptides

Short-chain dehydrogenase/reductase SDR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Short-chain dehydrogenase/reductase SDR

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