SMTL ID : 3gei.1 (1 other biounit)

Crystal structure of MnmE from Chlorobium tepidum in complex with GCP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 15 residues within 4Å: Chain A: K.241, P.242, N.243, A.244, G.245, K.246, S.247, T.248, N.351, K.352, D.354, S.378, A.379, L.380 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.243, A:A.244, A:G.245, A:K.246, A:S.247, A:S.247, A:T.248, A:T.248, A:N.351, A:K.352, A:K.352, A:S.378, A:A.379, A:L.380 Salt bridges: A:D.354 GCP.3: 15 residues within 4Å: Chain B: K.241, P.242, N.243, A.244, G.245, K.246, S.247, T.248, N.351, K.352, D.354, S.378, A.379, L.380 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.243, B:A.244, B:G.245, B:K.246, B:S.247, B:S.247, B:T.248, B:N.351, B:K.352, B:K.352, B:S.378, B:A.379, B:L.380 Salt bridges: B:D.354

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.247 Ligands: GCP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.247 MG.4: 2 residues within 4Å: Chain B: S.247 Ligands: GCP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, S. et al., Kissing G domains of MnmE monitored by X-ray crystallography and pulse electron paramagnetic resonance spectroscopy. Plos Biol. (2009)

Release Date

2009-10-27

Peptides

tRNA modification GTPase mnmE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

tRNA modification GTPase mnmE

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