SMTL ID : 3gl2.1

Crystal structure of dicamba monooxygenase bound to dicamba

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.1: 9 residues within 4Å: Chain A: C.49, H.51, R.52, A.54, C.68, Y.70, H.71, G.72, L.73 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.49, A:H.51, A:C.68, A:H.71 FES.4: 10 residues within 4Å: Chain B: C.49, H.51, R.52, F.53, A.54, C.68, Y.70, H.71, G.72, L.73 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.49, B:H.51, B:C.68, B:H.71 FES.7: 10 residues within 4Å: Chain C: C.49, H.51, R.52, F.53, A.54, C.68, Y.70, H.71, G.72, L.73 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.49, C:H.51, C:C.68, C:H.71

2 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: N.154, H.160, H.165, D.294 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.160, A:H.165, A:D.294, A:D.294, H2O.6 FE.5: 4 residues within 4Å: Chain B: N.154, H.160, H.165, D.294 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.160, B:H.165, B:D.294, B:D.294, H2O.7

2 x D3M: 3,6-dichloro-2-methoxybenzoic acid(Non-covalent)

D3M.3: 8 residues within 4Å: Chain A: L.158, L.202, N.230, I.232, G.249, H.251, W.285, L.290 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.202, A:I.232, A:I.232, A:W.285 Hydrogen bonds: A:N.230, A:W.285 Water bridges: A:G.266 Salt bridges: A:H.251 D3M.6: 9 residues within 4Å: Chain B: L.158, L.202, N.230, I.232, G.249, H.251, L.282, W.285, L.290 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.202, B:I.232, B:I.232, B:W.285 Hydrogen bonds: B:N.230, B:W.285 Water bridges: B:G.266 Salt bridges: B:H.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dumitru, R. et al., Crystal structure of dicamba monooxygenase: a Rieske nonheme oxygenase that catalyzes oxidative demethylation. J.Mol.Biol. (2009)

Release Date

2009-08-04

Peptides

DdmC: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DdmC

Related Entries With Identical Sequence