SMTL ID : 3glv.1

Crystal structure of the lipopolysaccharide core biosynthesis protein from Thermoplasma volcanium GSS1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.9, V.10, F.11, H.18, K.47 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.10, A:F.11 Water bridges: A:D.12, A:H.18 Salt bridges: A:H.18, A:K.47 SO4.3: 4 residues within 4Å: Chain B: R.38, G.72, H.73, E.74 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.72, B:E.74 Salt bridges: B:R.38, B:H.73

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 16 residues within 4Å: Chain B: T.8, G.9, V.10, F.11, H.15, G.17, H.18, H.20, Y.21, G.92, Y.93, D.94, Q.95, S.119, K.120, Y.121 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.8, B:V.10, B:F.11, B:G.92, B:D.94, B:D.94, B:Y.121 Water bridges: B:D.12, B:K.47, B:Y.93, B:Y.93 Salt bridges: B:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., The crystal structure of the lipopolysaccharide core biosynthesis protein from Thermoplasma volcanium GSS1. To be Published

Release Date

2009-05-12

Peptides

Lipopolysaccharide core biosynthesis protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipopolysaccharide core biosynthesis protein