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SMTL ID : 3gmo.1

Structure of mouse CD1d in complex with C8PhF

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x C8F: 8-(4-fluorophenyl)-N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}octanamide(Non-covalent)
1 x PLM: PALMITIC ACID(Non-covalent)
4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Schiefner, A. et al., Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands. J.Mol.Biol. (2009)
Release Date
2009-11-10
Peptides
T-cell surface glycoprotein CD1d1: A
Beta-2 microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B