SMTL ID : 3gnd.1 (1 other biounit)

Crystal Structure of E. coli LsrF in complex with Ribulose-5-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-10-mer

Ligands

10 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)

5RP.1: 13 residues within 4Å: Chain A: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.61, A:Q.145, A:K.207, A:G.230, A:G.231, A:D.255, A:G.257, A:R.258, A:R.258 Salt bridges: A:H.62, A:K.207, A:R.258 5RP.2: 13 residues within 4Å: Chain B: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:D.61, B:Y.64, B:Q.145, B:K.207, B:G.230, B:G.231, B:D.255, B:G.257, B:R.258, B:R.258 Salt bridges: B:H.62, B:K.207, B:R.258 5RP.3: 13 residues within 4Å: Chain C: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:D.61, C:Y.64, C:Q.145, C:K.207, C:G.230, C:G.231, C:D.255, C:G.257, C:R.258, C:R.258 Salt bridges: C:H.62, C:K.207, C:R.258 5RP.4: 13 residues within 4Å: Chain D: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:D.61, D:Q.145, D:K.207, D:G.230, D:G.231, D:D.255, D:G.257, D:R.258, D:R.258 Salt bridges: D:H.62, D:K.207, D:R.258 5RP.5: 13 residues within 4Å: Chain E: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:D.61, E:Q.145, E:K.207, E:G.230, E:G.231, E:D.255, E:G.257, E:R.258, E:R.258 Salt bridges: E:H.62, E:R.258 5RP.6: 13 residues within 4Å: Chain F: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:D.61, F:Q.145, F:K.207, F:G.230, F:G.231, F:D.255, F:G.257, F:R.258, F:R.258 Salt bridges: F:H.62, F:R.258 5RP.7: 13 residues within 4Å: Chain G: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:D.61, G:Q.145, G:K.207, G:G.230, G:G.231, G:D.255, G:G.257, G:R.258, G:R.258 Salt bridges: G:H.62, G:R.258 5RP.8: 14 residues within 4Å: Chain H: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, A.229, G.230, G.231, D.255, M.256, G.257, R.258 11 PLIP interactions: 11 interactions with chain H Hydrogen bonds: H:D.61, H:Q.145, H:K.207, H:G.230, H:G.231, H:D.255, H:G.257, H:R.258, H:R.258 Salt bridges: H:H.62, H:R.258 5RP.9: 13 residues within 4Å: Chain I: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:D.61, I:Y.64, I:Q.145, I:K.207, I:G.230, I:G.231, I:D.255, I:G.257, I:R.258, I:R.258 Salt bridges: I:H.62, I:R.258 5RP.10: 13 residues within 4Å: Chain J: D.61, H.62, Y.64, F.65, R.111, Q.145, K.207, G.230, G.231, D.255, M.256, G.257, R.258 12 PLIP interactions: 12 interactions with chain J Hydrogen bonds: J:D.61, J:Y.64, J:Q.145, J:K.207, J:G.230, J:G.231, J:D.255, J:G.257, J:R.258, J:R.258 Salt bridges: J:H.62, J:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diaz, Z. et al., The crystal structure of the Escherichia coli autoinducer-2 processing protein LsrF. Plos One (2009)

Release Date

2009-09-08

Peptides

Aldolase lsrF: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Aldolase lsrF

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