SMTL ID : 3gne.1 (1 other biounit)

Crystal structure of alginate lyase vAL-1 from Chlorella virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 11 residues within 4Å: Chain A: T.50, K.92, S.104, G.105, R.116, Y.128, Y.130, H.147, F.220, G.222, G.223 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.92, A:K.92, A:G.105, A:Y.128, A:Y.130, A:Y.130, A:G.223 Salt bridges: A:K.92, A:K.92, A:K.92, A:R.116, A:H.147, A:H.147

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: T.50, S.51, N.53, P.54, G.55, V.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53 GOL.3: 7 residues within 4Å: Chain A: F.97, S.104, R.116, R.214, D.216, N.218, F.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.116, A:R.214, A:N.218 Water bridges: A:D.216 GOL.4: 8 residues within 4Å: Chain A: T.6, L.7, D.8, L.11, G.16, G.17, S.18, W.19 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.6, A:D.8, A:G.16, A:S.18 Water bridges: A:T.6, A:S.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ogura, K. et al., Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action. J.Biol.Chem. (2009)

Release Date

2009-10-20

Peptides

VAL-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VAL-1

Related Entries With Identical Sequence