SMTL ID : 3gnv.2 (1 other biounit)

HCV NS5B polymerase in complex with 1,5 benzodiazepine inhibitor 1b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x XNZ: (11R)-10-acetyl-11-[4-(benzyloxy)-2-chlorophenyl]-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one(Non-covalent)

XNZ.1: 18 residues within 4Å: Chain A: F.196, P.200, R.203, C.369, S.370, S.371, L.387, R.389, S.410, G.413, N.414, M.417, Y.418, Q.449, I.450, Y.451, G.452, S.559 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.200, A:P.200, A:L.387, A:L.387, A:M.417, A:Y.418, A:Y.451 Hydrogen bonds: A:S.370, A:R.389, A:Y.451, A:G.452 Water bridges: A:S.370, A:R.389

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.85, L.86, S.87, W.126, M.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vandyck, K. et al., Structure-based design of a benzodiazepine scaffold yields a potent allosteric inhibitor of hepatitis C NS5B RNA polymerase. J.Med.Chem. (2009)

Release Date

2009-10-20

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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