- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: R.91
- Ligands: CDP.1
No protein-ligand interaction detected (PLIP)MG.5: 2 residues within 4Å:- Chain B: R.91
- Ligands: CDP.4
No protein-ligand interaction detected (PLIP)MG.7: 2 residues within 4Å:- Chain C: R.91
- Ligands: CDP.6
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain D: R.91
- Ligands: CDP.8
No protein-ligand interaction detected (PLIP)MG.12: 2 residues within 4Å:- Chain E: R.91
- Ligands: CDP.11
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Chain F: R.91
- Ligands: CDP.13
No protein-ligand interaction detected (PLIP)- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 6 residues within 4Å:- Chain A: G.101, D.106
- Chain B: G.101, D.106
- Chain C: G.101, D.106
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:D.106, A:G.101
- Salt bridges: A:R.29
PO4.10: 6 residues within 4Å:- Chain D: G.101, D.106
- Chain E: G.101, D.106
- Chain F: G.101, D.106
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:D.106, D:G.101
- Salt bridges: D:R.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
AE
CF
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeudy, S. et al., Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase. J.Virol. (2009)
- Release Date
- 2009-08-11
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
AE
CF
E