SMTL ID : 3gr8.1 (2 other biounits)

Structure of OYE from Geobacillus kaustophilus, orthorhombic crystal form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 16 residues within 4Å: Chain A: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, L.285, L.306, G.307, R.308 Chain B: R.336 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:M.25 Hydrogen bonds: A:S.23, A:S.23, A:P.24, A:C.26, A:A.60, A:Q.102, A:Q.102, A:H.167, A:R.215, A:G.284, A:L.285, A:G.307, A:R.308, A:R.308 Water bridges: A:I.286, A:I.286, A:E.309, A:E.309 Salt bridges: A:R.308 FMN.5: 16 residues within 4Å: Chain A: R.336 Chain B: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, H.167, R.215, V.283, G.284, L.285, L.306, G.307, R.308 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:M.25 Hydrogen bonds: B:S.23, B:S.23, B:P.24, B:C.26, B:A.60, B:Q.102, B:Q.102, B:H.167, B:R.215, B:G.284, B:L.285, B:G.307, B:R.308, B:R.308 Water bridges: B:I.286, B:I.286, B:E.309, B:E.309 Salt bridges: B:R.308 FMN.9: 14 residues within 4Å: Chain C: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, R.215, V.283, G.284, L.285, L.306, G.307, R.308 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:M.25 Hydrogen bonds: C:S.23, C:S.23, C:P.24, C:C.26, C:A.60, C:Q.102, C:Q.102, C:R.215, C:G.284, C:L.285, C:G.307, C:R.308, C:R.308 Water bridges: C:I.286, C:I.286, C:I.286, C:E.309 Salt bridges: C:R.308 FMN.10: 14 residues within 4Å: Chain D: S.23, P.24, M.25, C.26, A.60, Q.102, H.164, R.215, V.283, G.284, L.285, L.306, G.307, R.308 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:M.25 Hydrogen bonds: D:S.23, D:S.23, D:P.24, D:C.26, D:A.60, D:Q.102, D:Q.102, D:R.215, D:G.284, D:L.285, D:G.307, D:R.308, D:R.308 Water bridges: D:I.286, D:I.286, D:I.286, D:E.309 Salt bridges: D:R.308

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: E.191, R.195, R.237 Ligands: BTB.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.191 Salt bridges: A:R.195, A:R.237 SO4.6: 4 residues within 4Å: Chain B: E.191, R.195, R.237 Ligands: BTB.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.191 Salt bridges: B:R.195, B:R.237

4 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.3: 6 residues within 4Å: Chain A: P.177, D.224, G.225, L.226, K.229, D.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.224, A:K.229, A:K.229, A:D.230 Water bridges: A:D.230 Salt bridges: A:D.230 BTB.4: 9 residues within 4Å: Chain A: E.191, Y.194, R.195, G.198, E.199, D.202, R.237, Q.241 Ligands: SO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.191, A:R.195, A:D.202, A:D.202, A:R.237, A:Q.241 BTB.7: 6 residues within 4Å: Chain B: P.177, D.224, G.225, L.226, K.229, D.230 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.224, B:K.229, B:K.229, B:D.230 Water bridges: B:D.230 Salt bridges: B:D.230 BTB.8: 9 residues within 4Å: Chain B: E.191, Y.194, R.195, G.198, E.199, D.202, R.237, Q.241 Ligands: SO4.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.191, B:R.195, B:D.202, B:D.202, B:R.237, B:Q.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schittmayer, M. et al., Old Yellow Enzyme-Catalyzed Dehydrogenation of Saturated Ketones. ADV.SYNTH.CATAL. (2011)

Release Date

2010-03-31

Peptides

NADPH dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

NADPH dehydrogenase

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