SMTL ID : 3gvu.2 (1 other biounit)

The crystal structure of human ABL2 in complex with GLEEVEC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x STI: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE(Non-covalent)

STI.1: 21 residues within 4Å: Chain A: L.40, Y.45, V.48, A.61, V.62, K.63, E.78, V.81, M.82, I.85, V.91, I.105, T.107, Y.109, M.110, I.152, H.153, L.162, A.172, D.173, F.174 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.40, A:Y.45, A:V.48, A:A.61, A:E.78, A:I.105, A:T.107, A:L.162, A:D.173, A:F.174 Hydrogen bonds: A:E.78, A:E.78, A:T.107, A:M.110, A:D.173 Salt bridges: A:D.173 pi-Stacking: A:Y.45 STI.2: 11 residues within 4Å: Chain A: A.129, V.130, L.132, L.133, A.225, Y.227, E.254, G.255, P.257, V.260, M.288 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.129, A:V.130, A:L.132, A:A.225, A:Y.227, A:V.260, A:V.260 Hydrogen bonds: A:A.129, A:L.133 Water bridges: A:A.225, A:G.255 Salt bridges: A:E.254 STI.3: 21 residues within 4Å: Chain B: L.40, Y.45, V.48, A.61, V.62, K.63, E.78, V.81, M.82, I.85, V.91, I.105, T.107, Y.109, M.110, I.152, H.153, L.162, A.172, D.173, F.174 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.40, B:Y.45, B:V.48, B:A.61, B:E.78, B:I.105, B:T.107, B:L.162, B:D.173, B:F.174 Hydrogen bonds: B:E.78, B:T.107, B:T.107, B:M.110, B:D.173 Salt bridges: B:D.173 pi-Stacking: B:Y.45 STI.4: 11 residues within 4Å: Chain B: A.129, V.130, L.132, L.133, A.225, Y.227, E.254, G.255, P.257, V.260, M.288 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.129, B:V.130, B:L.132, B:A.225, B:Y.227, B:V.260, B:V.260 Hydrogen bonds: B:A.129, B:L.133 Water bridges: B:A.225, B:G.255 Salt bridges: B:E.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salah, E. et al., The crystal structure of human ABL2 in complex with GLEEVEC. To be Published

Release Date

2009-04-21

Peptides

Tyrosine-protein kinase ABL2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Tyrosine-protein kinase ABL2

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