SMTL ID : 3gyn.2 (1 other biounit)

Crystal structure of HCV NS5B polymerase with a novel monocyclic dihydropyridinone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x B42: N-{3-[(5R)-1-cyclopentyl-4-hydroxy-5-methyl-5-(3-methylbutyl)-2-oxo-1,2,5,6-tetrahydropyridin-3-yl]-1,1-dioxido-4H-1,2,4-benzothiadiazin-7-yl}methanesulfonamide(Non-covalent)

B42.1: 20 residues within 4Å: Chain A: F.193, P.197, R.200, S.288, N.291, N.316, G.317, D.318, C.366, L.384, R.386, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, G.449, S.556 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.197, A:Y.448 Hydrogen bonds: A:N.291, A:D.318, A:D.318, A:Y.448 Water bridges: A:G.449, A:G.449, A:S.556, A:S.556 pi-Stacking: A:F.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellis, D.A. et al., 5,5'- and 6,6'-dialkyl-5,6-dihydro-1H-pyridin-2-ones as potent inhibitors of HCV NS5B polymerase. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-12-08

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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