SMTL ID : 3gzb.2 (3 other biounits)

Crystal structure of putative SnoaL-like polyketide cyclase (YP_001182657.1) from Shewanella putrefaciens CN-32 at 1.44 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 7 residues within 4Å: Chain A: A.73, V.77, F.102, I.120, M.147 Ligands: MRD.2, MRD.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.77, A:F.102, A:F.102, A:I.120 Water bridges: A:Y.144, A:Y.144 MRD.2: 9 residues within 4Å: Chain A: L.33, F.51, F.69, L.70, H.74, Y.80, Y.100, D.140 Ligands: MRD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.51, A:F.69, A:L.70, A:Y.100 Hydrogen bonds: A:H.74 MRD.3: 6 residues within 4Å: Chain A: D.53, A.56, R.58, F.69, Y.144 Ligands: MRD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.53, A:A.56, A:F.69, A:Y.144

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: E.79, Y.80, D.81, H.101, F.102, K.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.101, A:K.103 EDO.5: 6 residues within 4Å: Chain A: I.42, Y.45, N.46, R.47, G.63, R.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.46, A:G.63, A:R.64 Water bridges: A:R.64, A:R.64 EDO.7: 8 residues within 4Å: Chain B: L.33, F.51, F.69, L.70, H.74, Y.80, Y.100 Ligands: MPD.6 No protein-ligand interaction detected (PLIP) EDO.8: 7 residues within 4Å: Chain B: I.42, Y.45, N.46, R.47, G.62, G.63, R.64 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.45, B:G.63, B:R.64 EDO.9: 2 residues within 4Å: Chain B: L.78, K.103 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain B: H.36, Y.38, E.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.71

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 6 residues within 4Å: Chain B: H.74, Y.80, Y.100, F.102, I.142 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.100, B:F.102, B:I.142 Hydrogen bonds: B:Y.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative SnoaL-like polyketide cyclase (YP_001182657.1) from Shewanella putrefaciens CN-32 at 1.44 A resolution. To be published

Release Date

2009-04-21

Peptides

Putative SnoaL-like polyketide cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative SnoaL-like polyketide cyclase

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