SMTL ID : 3gzr.1

CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN WITH A CYSTATIN-LIKE FOLD (CC_2572) FROM CAULOBACTER VIBRIOIDES AT 1.40 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 14 residues within 4Å: Chain A: N.39, V.40, V.41, M.43, F.58, I.62, F.63, Y.94, T.96, P.97, R.100 Chain B: A.134, N.137 Ligands: SO4.5 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.137, A:N.39 Water bridges: B:N.131, A:R.100 pi-Stacking: A:F.58 UNL.2: 4 residues within 4Å: Chain A: W.37, N.39, V.40, N.127 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.37, A:N.39, A:V.40, A:N.127 Water bridges: A:Q.91, A:Q.91 UNL.7: 13 residues within 4Å: Chain A: A.134 Chain B: N.39, V.40, V.41, M.43, F.58, I.62, F.63, Y.94, T.96, P.97, D.98, R.100 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.39, B:Y.94, B:D.98, B:R.100, A:A.134 Water bridges: B:D.98, B:D.98, A:N.131 pi-Stacking: B:F.58 UNL.8: 4 residues within 4Å: Chain B: W.37, N.39, V.40, N.127 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:W.37, B:N.39, B:V.40, B:N.127 Water bridges: B:Q.68, B:Q.68, B:Q.91

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.142 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.142, A:R.142 Salt bridges: A:R.142 SO4.4: 2 residues within 4Å: Chain A: R.108 Chain B: R.46 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Water bridges: B:G.42, B:R.46, B:R.46, B:R.46, B:R.46, A:T.88, A:T.88, A:R.108, A:R.108, A:D.138 Salt bridges: B:R.46, A:R.108 SO4.5: 8 residues within 4Å: Chain A: T.96, P.97, D.98, R.100 Chain B: D.133, A.134, N.137 Ligands: UNL.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.96, A:D.98, B:N.137 Salt bridges: A:R.100 SO4.9: 2 residues within 4Å: Chain A: R.46 Chain B: R.108 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B Water bridges: A:H.44, A:H.44, A:H.44, A:R.46, A:R.46, B:T.88, B:R.108, B:R.108, B:D.138, B:D.138 Salt bridges: A:R.46, B:R.108 SO4.10: 3 residues within 4Å: Chain B: P.33, R.48, R.121 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.121, B:R.121 Salt bridges: B:R.48, B:R.121

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: G.2, E.3, G.4, T.5, R.76, T.77 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.2, A:G.2, A:G.4, A:T.5, A:T.5, A:T.77, A:T.77 Water bridges: A:E.3, A:E.3, A:T.5, A:A.75, A:A.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Domain of unknown function with a NTF2-like fold (NP_421374.1) from CAULOBACTER CRESCENTUS at 1.40 A resolution. To be published

Release Date

2009-04-21

Peptides

uncharacterized protein with a NTF2-like fold: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

uncharacterized protein with a NTF2-like fold