SMTL ID : 3h20.1 (1 other biounit)

Crystal structure of primase RepB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.110, K.174, T.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.175, A:T.175 Water bridges: A:K.174 Salt bridges: A:K.110 SO4.2: 2 residues within 4Å: Chain A: R.285, K.289 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.289 Salt bridges: A:R.285, A:K.289 SO4.3: 5 residues within 4Å: Chain A: G.117, G.121, R.125, D.139, S.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.125, A:S.140 Water bridges: A:G.117, A:Q.122, A:A.138

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.4: 4 residues within 4Å: Chain A: Y.62, R.145, N.151, K.153 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.62, A:T.100, A:N.151 Water bridges: A:D.77, A:S.101, A:Q.106, A:Q.106 Salt bridges: A:R.145, A:R.145, A:K.153, A:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geibel, S. et al., Structure and function of primase RepB' encoded by broad-host-range plasmid RSF1010 that replicates exclusively in leading-strand mode. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-04-28

Peptides

Replication protein B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replication protein B

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