- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.2: 2 residues within 4Å:- Chain A: D.217
- Ligands: ATP.3
No protein-ligand interaction detected (PLIP)MG.6: 2 residues within 4Å:- Chain B: D.217
- Ligands: ATP.7
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Ligands: ATP.10
No protein-ligand interaction detected (PLIP)MG.12: 2 residues within 4Å:- Chain D: D.217
- Ligands: ATP.13
No protein-ligand interaction detected (PLIP)- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 20 residues within 4Å:- Chain A: G.125, C.126, G.127, G.128, D.149, D.151, N.157, R.160, Q.161, K.173, L.195, N.196, I.197, A.216, D.217, H.218, L.222, Y.242
- Chain B: R.97
- Ligands: MG.2
27 PLIP interactions:2 interactions with chain B, 25 interactions with chain A- Water bridges: B:R.97, A:I.129, A:I.129, A:D.149, A:N.150, A:E.154, A:R.160, A:R.160, A:R.160, A:R.160, A:R.160
- Salt bridges: B:R.97, A:R.160, A:R.160, A:R.160, A:K.173, A:K.173
- Hydrogen bonds: A:C.126, A:G.127, A:G.128, A:N.157, A:Q.161, A:I.197, A:D.217, A:H.218, A:H.218, A:Y.242
ATP.7: 20 residues within 4Å:- Chain A: R.97
- Chain B: G.125, C.126, G.127, G.128, D.149, D.151, N.157, R.160, Q.161, K.173, L.195, N.196, I.197, A.216, D.217, H.218, L.222, Y.242
- Ligands: MG.6
31 PLIP interactions:28 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:C.126, B:G.128, B:D.151, B:N.157, B:Q.161, B:K.173, B:N.196, B:I.197, B:D.217, B:H.218, B:H.218
- Water bridges: B:I.129, B:I.129, B:N.150, B:N.150, B:R.160, B:R.160, B:R.160, B:R.160, B:K.173, B:H.218, B:Y.242, B:T.293, A:R.97, A:R.97
- Salt bridges: B:R.160, B:R.160, B:R.160, B:K.173, B:K.173, A:R.97
ATP.10: 20 residues within 4Å:- Chain C: G.125, C.126, G.127, G.128, D.149, D.151, N.157, R.160, Q.161, K.173, L.195, N.196, I.197, A.216, D.217, H.218, L.222, Y.242
- Chain D: R.97
- Ligands: MG.9
26 PLIP interactions:25 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:C.126, C:G.127, C:G.128, C:D.151, C:N.157, C:Q.161, C:N.196, C:I.197, C:D.217, C:H.218, C:H.218, C:Y.242
- Water bridges: C:I.129, C:I.129, C:D.149, C:N.150, C:R.160, C:K.173, C:K.173
- Salt bridges: C:R.160, C:R.160, C:R.160, C:K.173, C:K.173, C:K.290, D:R.97
ATP.13: 19 residues within 4Å:- Chain D: G.125, C.126, G.127, G.128, D.149, D.151, N.157, R.160, Q.161, K.173, L.195, N.196, I.197, A.216, D.217, H.218, L.222, Y.242
- Ligands: MG.12
27 PLIP interactions:27 interactions with chain D- Hydrogen bonds: D:C.126, D:G.127, D:G.128, D:D.151, D:N.157, D:R.160, D:Q.161, D:I.197, D:D.217, D:H.218, D:H.218, D:Y.242
- Water bridges: D:I.129, D:I.129, D:D.149, D:N.150, D:T.156, D:T.156, D:R.160, D:R.160, D:K.173, D:K.173, D:K.290
- Salt bridges: D:R.160, D:K.173, D:K.173, D:K.290
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Regni, C.A. et al., How the MccB bacterial ancestor of ubiquitin E1 initiates biosynthesis of the microcin C7 antibiotic. Embo J. (2009)
- Release Date
- 2009-06-16
- Peptides
- MccB protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Regni, C.A. et al., How the MccB bacterial ancestor of ubiquitin E1 initiates biosynthesis of the microcin C7 antibiotic. Embo J. (2009)
- Release Date
- 2009-06-16
- Peptides
- MccB protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D