SMTL ID : 3h6h.1

Crystal structure of the GluR6 amino terminal domain dimer assembly MPD form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.36, T.38, L.39, W.337 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.39, A:W.337 NAG.2: 5 residues within 4Å: Chain A: G.242, V.243, N.244, S.362, K.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.242, A:S.362, A:K.364 NAG.3: 4 residues within 4Å: Chain A: S.123, N.347, N.350, T.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.347, A:N.350 NAG.4: 3 residues within 4Å: Chain A: S.378, N.381, T.383 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.378, A:N.381 NAG.6: 4 residues within 4Å: Chain B: N.36, T.38, L.39, W.337 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.337 NAG.7: 5 residues within 4Å: Chain B: G.242, V.243, N.244, S.362, K.364 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.244, B:S.362 NAG.8: 3 residues within 4Å: Chain B: N.347, N.350, T.354 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.350, B:T.354 NAG.9: 3 residues within 4Å: Chain B: S.378, N.381, T.383 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.378, B:N.381

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: I.33, N.34, N.36, L.39, L.40, T.43 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:I.33, A:N.36, A:L.39, A:L.40 CA.10: 6 residues within 4Å: Chain B: I.33, N.34, N.36, L.39, L.40, T.43 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:I.33, B:L.39, B:L.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J. et al., The N-terminal domain of GluR6-subtype glutamate receptor ion channels. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-05-26

Peptides

Glutamate receptor, ionotropic kainate 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor, ionotropic kainate 2

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