SMTL ID : 3h6s.2 (3 other biounits)

Structure of clitocypin - cathepsin V complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.149, G.150, E.174, S.196, K.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.150, A:S.196 Water bridges: A:K.201, A:K.201 Salt bridges: A:K.201 SO4.2: 4 residues within 4Å: Chain A: G.118, K.119, E.120, K.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.120, A:K.121 Salt bridges: A:K.119, A:K.121 SO4.3: 5 residues within 4Å: Chain B: R.34, S.78, G.91, D.92, K.94 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.78, B:D.92 Water bridges: B:R.34, B:D.80 Salt bridges: B:R.34, B:K.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renko, M. et al., Versatile loops in mycocypins inhibit three protease families. J.Biol.Chem. (2010)

Release Date

2009-10-20

Peptides

Cathepsin L2: A
Clitocypin analog: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Cathepsin L2

Clitocypin analog

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