SMTL ID : 3hbf.1

Structure of UGT78G1 complexed with myricetin and UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: T.25, Y.277, S.279, S.282, S.308, R.310, W.334, A.335, Q.337, H.352, G.354, W.355, N.356, S.357, E.360 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:T.25, A:T.25, A:T.25, A:Y.277, A:S.282, A:S.308, A:A.335, A:A.335, A:Q.337, A:Q.337, A:N.356, A:S.357, A:E.360 Water bridges: A:F.280, A:G.281, A:S.282, A:V.338, A:Q.377, A:Q.377 Salt bridges: A:H.352, A:H.352 pi-Stacking: A:W.334

1 x MYC: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)

MYC.2: 13 residues within 4Å: Chain A: R.89, F.93, W.145, S.151, H.155, P.191, E.192, V.200, F.202, L.206, F.374, G.375, D.376 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.89, A:F.202, A:F.202, A:L.206 Hydrogen bonds: A:R.89, A:H.155, A:E.192, A:D.376 pi-Stacking: A:F.202, A:F.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modolo, L.V. et al., Crystal structures of glycosyltransferase UGT78G1 reveal the molecular basis for glycosylation and deglycosylation of (iso)flavonoids. J.Mol.Biol. (2009)

Release Date

2009-09-01

Peptides

Flavonoid 3-O-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavonoid 3-O-glucosyltransferase

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