SMTL ID : 3hbl.1

Crystal Structure of S. aureus Pyruvate Carboxylase T908A Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-tetramer

Ligands

4 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Covalent)

BTI.1: 10 residues within 4Å: Chain A: K.1112 Chain B: Y.472, N.475, G.480, F.481, P.482, F.588, K.590, L.998, F.1006 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.588 BTI.3: 11 residues within 4Å: Chain A: Y.472, N.475, V.476, G.480, F.481, P.482, N.587, F.588, K.590, L.998 Chain B: K.1112 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.476 Hydrogen bonds: A:N.587, A:K.590 BTI.5: 12 residues within 4Å: Chain C: K.1112 Chain D: Y.472, N.475, V.476, G.480, F.481, P.482, F.588, K.590, L.998, F.1006, E.1060 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.472, D:V.476 Hydrogen bonds: D:N.587 BTI.8: 14 residues within 4Å: Chain C: Q.545, A.580, D.583, V.584, N.587, F.588, R.614, Y.621, Q.838, N.841, A.876, S.879, K.880 Chain D: K.1112 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.584, C:N.841 Hydrogen bonds: C:Y.621, C:Q.838, C:S.879, C:S.879

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.542, K.712, H.741, H.743 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.542, A:H.741, A:H.743 MN.4: 4 residues within 4Å: Chain B: D.542, K.712, H.741, H.743 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.542, B:H.741, B:H.743 MN.7: 4 residues within 4Å: Chain C: D.542, K.712, H.741, H.743 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.542, C:H.741, C:H.743 MN.9: 4 residues within 4Å: Chain D: D.542, K.712, H.741, H.743 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.542, D:H.741, D:H.743

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 20 residues within 4Å: Chain C: K.119, M.159, K.161, G.165, G.166, G.167, G.168, M.171, E.203, R.204, Y.205, I.206, H.211, Q.235, H.238, E.278, L.280, I.289, E.290, T.447 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:K.161, C:G.165, C:G.166, C:G.167, C:G.168, C:E.203, C:R.204, C:I.206, C:Q.235, C:H.238, C:E.290 Salt bridges: C:K.119, C:K.119, C:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, L.P. et al., A Symmetrical Tetramer for S. aureus Pyruvate Carboxylase in Complex with Coenzyme A. Structure (2009)

Release Date

2009-06-30

Peptides

Pyruvate carboxylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate carboxylase