SMTL ID : 3hfj.1

Bacillus anthracis nicotinate mononucleotide adenylytransferase (nadD) in complex with inhibitor CID 3289443

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x DZ9: 3-amino-N-(3-fluorophenyl)-6-thiophen-2-ylthieno[2,3-b]pyridine-2-carboxamide(Non-covalent)

DZ9.1: 11 residues within 4Å: Chain A: T.87, F.105, I.107, M.111, Y.114, W.118 Chain B: F.105, M.111, Y.114, K.117, W.118 16 PLIP interactions: 6 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:F.105, A:I.107, A:W.118, A:W.118, B:F.105, B:K.117, B:W.118 Water bridges: A:W.118, B:K.117, B:Y.119, B:Y.119 pi-Stacking: A:Y.114, B:Y.114, B:W.118, B:W.118, B:W.118

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: E.184, E.190 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.184, A:E.190, H2O.1, H2O.5, H2O.6 CA.3: 1 residues within 4Å: Chain A: E.190 No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain B: E.184, E.190 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.184, B:E.190, H2O.7, H2O.9, H2O.10, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorci, L. et al., Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD. Chem.Biol. (2009)

Release Date

2009-09-08

Peptides

Nicotinate (Nicotinamide) nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinate (Nicotinamide) nucleotide adenylyltransferase

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