- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 9 residues within 4Å:- Chain A: Y.82, R.84, E.138
- Chain B: Y.82, R.84, E.138
- Chain C: Y.82, R.84, E.138
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.82, A:R.84
NA.11: 5 residues within 4Å:- Chain B: N.95, N.118, S.120, R.122, F.124
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.118, B:S.120, B:R.122
- Water bridges: B:R.122
NA.16: 4 residues within 4Å:- Chain A: V.141
- Chain C: A.49, I.136, L.137
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.49, C:L.137
NA.18: 3 residues within 4Å:- Chain C: A.36, A.38, T.39
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.39
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 10 residues within 4Å:- Chain A: A.86, P.87, R.88, L.91, A.92, I.97, T.99, L.116, V.132, A.133
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.88, A:R.88, A:V.132
EDO.5: 8 residues within 4Å:- Chain A: R.84, P.87, Q.98, T.99
- Chain B: T.99, G.100, A.101
- Ligands: EDO.14
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:G.100, A:R.84, A:Q.98
- Water bridges: B:A.101, A:R.84, A:I.85, A:T.99, A:T.99
EDO.6: 5 residues within 4Å:- Chain A: V.103, V.104, D.105, Y.108
- Chain C: S.89
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:S.89, A:D.105, A:D.105
- Water bridges: C:S.89
EDO.7: 3 residues within 4Å:- Chain A: Q.121, R.122, D.123
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.123, A:D.123
EDO.14: 7 residues within 4Å:- Chain B: R.84, I.85, P.87, Q.98, T.99
- Ligands: EDO.5, EDO.20
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.84, B:T.99, B:T.99
EDO.17: 5 residues within 4Å:- Chain B: S.89
- Chain C: V.103, V.104, D.105, Y.108
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:S.89, C:D.105, C:D.105
EDO.19: 4 residues within 4Å:- Chain C: R.88, S.89, G.90, L.91
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.89, C:G.90, C:L.91
- Water bridges: C:S.89
EDO.20: 10 residues within 4Å:- Chain B: R.84, P.87
- Chain C: R.84, I.85, A.86, T.99, A.101, G.102, V.103
- Ligands: EDO.14
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:R.84, B:R.84, C:R.84, C:T.99, C:T.99
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
O