- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 9 residues within 4Å:- Chain A: A.86, P.87, R.88, L.91, A.92, I.97, T.99, V.132, A.133
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.88, A:A.92, A:I.97, A:V.132
EDO.7: 9 residues within 4Å:- Chain A: R.84, P.87
- Chain B: R.84, I.85, A.86, T.99, A.101, G.102, V.103
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.84, A:R.84, B:R.84, B:I.85, B:T.99
EDO.8: 7 residues within 4Å:- Chain B: A.38, T.39, P.41, I.53, Y.54, T.71, I.73
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.39, B:D.52, B:Y.54, B:T.71
EDO.9: 3 residues within 4Å:- Chain B: R.88, G.90, L.91
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.90, B:L.91
- Water bridges: B:S.89, B:S.89
EDO.10: 3 residues within 4Å:- Chain B: G.90, V.93, K.94
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.94, B:K.94
EDO.13: 6 residues within 4Å:- Chain C: Y.108, E.111, V.112, K.113, V.115
- Ligands: EDO.14
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.108, C:E.111, C:K.113
EDO.14: 6 residues within 4Å:- Chain B: S.89
- Chain C: V.103, V.104, D.105, Y.108
- Ligands: EDO.13
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:S.89, B:S.89, C:D.105
- Water bridges: C:D.105, C:D.107
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
PB
QC
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
PB
QC
R