- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.3: 1 residues within 4Å:- Chain A: T.99
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain A- Water bridges: C:Q.98, A:R.84
- Hydrogen bonds: A:T.99, A:T.99
NA.6: 5 residues within 4Å:- Chain B: T.42, K.43, G.44, A.48, G.50
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.42, B:G.44
- Water bridges: B:G.50
NA.7: 2 residues within 4Å:- Chain B: R.84, I.85
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.84, B:I.85, B:T.99
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: R.88, S.89, G.90, K.94
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.88, A:G.90, A:K.94
EDO.9: 7 residues within 4Å:- Chain B: P.87, R.88, S.89, Q.134
- Chain C: V.103, D.105
- Ligands: GOL.15
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:S.89, C:D.105
EDO.10: 6 residues within 4Å:- Chain A: S.89
- Chain B: V.103, V.104, D.105, Y.108
- Ligands: EDO.11
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.105, B:D.105, A:S.89
EDO.11: 9 residues within 4Å:- Chain A: S.89
- Chain B: I.85, G.100, A.101, G.102, K.113, V.114, V.115
- Ligands: EDO.10
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.89, B:G.102, B:V.115
EDO.14: 8 residues within 4Å:- Chain A: Q.66
- Chain C: V.93, K.94, N.95, G.96, S.120, R.122
- Ligands: SO4.12
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:V.93, C:G.96, C:H.119, C:R.122
- Water bridges: C:R.122
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SB
TC
U
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SB
TC
U