- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x RAT: D-arabinaric acid(Non-covalent)
- 8 x CO3: CARBONATE ION(Non-functional Binders)
CO3.2: 8 residues within 4Å:- Chain A: H.49, Y.50, A.53, A.272, W.326, F.327
- Chain B: R.314, K.315
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.314, B:K.315, A:H.49, A:W.326
CO3.3: 8 residues within 4Å:- Chain A: R.314, K.315
- Chain C: H.49, Y.50, A.53, A.272, W.326, F.327
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:R.314, A:K.315, C:H.49
CO3.10: 8 residues within 4Å:- Chain B: H.49, Y.50, A.53, A.272, W.326, F.327
- Chain C: R.314, K.315
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:H.49, C:R.314, C:K.315
CO3.13: 2 residues within 4Å:- Chain D: R.314, K.315
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.314, D:K.315
CO3.17: 2 residues within 4Å:- Chain E: R.314, K.315
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:R.314, E:K.315, E:K.315
CO3.21: 8 residues within 4Å:- Chain E: H.49, Y.50, A.53, A.272, W.326, F.327
- Chain F: R.314, K.315
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:R.314, F:K.315, E:H.49
CO3.25: 2 residues within 4Å:- Chain G: R.314, K.315
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.314, G:K.315
CO3.26: 6 residues within 4Å:- Chain G: H.49, Y.50, A.53, A.272, W.326, F.327
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:H.49
- 7 x ZN: ZINC ION(Non-covalent)
ZN.4: 4 residues within 4Å:- Chain A: H.26, H.28, D.355
- Ligands: RAT.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.26, A:H.28, A:D.355
ZN.7: 4 residues within 4Å:- Chain B: H.26, H.28, D.355
- Ligands: RAT.6
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.26, B:H.28, B:D.355
ZN.11: 4 residues within 4Å:- Chain C: H.26, H.28, D.355
- Ligands: RAT.9
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.26, C:H.28, C:D.355
ZN.14: 4 residues within 4Å:- Chain D: H.26, H.28, D.355
- Ligands: RAT.12
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:H.26, D:H.28, D:D.355
ZN.18: 4 residues within 4Å:- Chain E: H.26, H.28, D.355
- Ligands: RAT.16
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:H.26, E:H.28, E:D.355
ZN.22: 4 residues within 4Å:- Chain F: H.26, H.28, D.355
- Ligands: RAT.20
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:H.26, F:H.28, F:D.355
ZN.27: 4 residues within 4Å:- Chain G: H.26, H.28, D.355
- Ligands: RAT.24
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:H.26, G:H.28, G:D.355
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.5: 2 residues within 4Å:- Chain A: E.332
- Chain C: E.332
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B- Water bridges: A:N.335, B:E.336
- Hydrogen bonds: C:E.332
NA.15: 1 residues within 4Å:- Chain D: E.332
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.332
- Water bridges: D:N.335
NA.23: 2 residues within 4Å:- Chain E: E.332
- Chain F: E.332
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Water bridges: F:E.332, F:N.335
- Hydrogen bonds: E:E.332
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, T.T. et al., The mechanism of the reaction catalyzed by uronate isomerase illustrates how an isomerase may have evolved from a hydrolase within the amidohydrolase superfamily. Biochemistry (2009)
- Release Date
- 2009-08-25
- Peptides
- Uronate isomerase: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
GF
HG
K
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x RAT: D-arabinaric acid(Non-covalent)
- 8 x CO3: CARBONATE ION(Non-functional Binders)
- 7 x ZN: ZINC ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, T.T. et al., The mechanism of the reaction catalyzed by uronate isomerase illustrates how an isomerase may have evolved from a hydrolase within the amidohydrolase superfamily. Biochemistry (2009)
- Release Date
- 2009-08-25
- Peptides
- Uronate isomerase: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
GF
HG
K