SMTL ID : 3hmz.1

CRYSTAL STRUCTURE OF A FMN-BINDING DOMAIN OF FLAVIN REDUCTASES-LIKE ENZYME (SBAL_0626) FROM SHEWANELLA BALTICA OS155 AT 1.50 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: N.43, M.45, A.46, A.47, A.48, W.49, V.63, L.64, D.65, T.68, K.69, T.70, H.94, V.96, G.97, S.98, Q.99, S.100, L.101, K.107, Y.183, F.189 Ligands: UNL.2, EDO.6 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:A.46, A:Y.183, A:Y.183, A:F.189 Hydrogen bonds: A:N.43, A:A.46, A:A.46, A:A.48, A:W.49, A:V.63, A:D.65, A:K.69, A:T.70, A:T.70, A:T.70, A:G.97, A:Q.99, A:S.100, A:L.101 Water bridges: A:D.65, A:S.100 Salt bridges: A:K.107 FMN.10: 24 residues within 4Å: Chain B: N.43, M.45, A.46, A.47, A.48, W.49, V.63, L.64, D.65, T.68, K.69, T.70, H.94, V.96, G.97, S.98, Q.99, S.100, L.101, K.107, Y.183, F.189 Ligands: UNL.11, EDO.15 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:A.46, B:Y.183, B:Y.183, B:F.189 Hydrogen bonds: B:N.43, B:A.46, B:A.46, B:A.48, B:W.49, B:V.63, B:D.65, B:K.69, B:T.70, B:T.70, B:G.97, B:Q.99, B:S.100, B:L.101 Water bridges: B:D.65, B:S.100 Salt bridges: B:K.107

2 x UNL: UNKNOWN LIGAND

UNL.2: 7 residues within 4Å: Chain A: A.48, W.49, Y.183 Chain B: N.27, F.55 Ligands: FMN.1, EDO.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27 UNL.11: 7 residues within 4Å: Chain A: N.27, F.55 Chain B: A.48, W.49, Y.183 Ligands: FMN.10, EDO.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 8 residues within 4Å: Chain A: G.29, A.48, C.50, C.51 Chain B: G.29, C.50, C.51 Ligands: IMD.12 No protein-ligand interaction detected (PLIP) IMD.12: 8 residues within 4Å: Chain A: G.29, C.50, C.51 Chain B: G.29, A.48, C.50, C.51 Ligands: IMD.3 No protein-ligand interaction detected (PLIP)

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: I.14, F.116, A.127, G.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.128 Water bridges: A:N.12 EDO.5: 4 residues within 4Å: Chain A: L.92, R.95, C.111, G.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.111 Water bridges: A:R.95 EDO.6: 6 residues within 4Å: Chain A: M.67, G.97, S.98, Q.99, S.100 Ligands: FMN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.98 EDO.7: 4 residues within 4Å: Chain A: T.86, A.88, D.177, K.178 No protein-ligand interaction detected (PLIP) EDO.8: 7 residues within 4Å: Chain A: W.49, V.63, D.65, D.148 Chain B: D.54, F.55 Ligands: UNL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.65, A:D.148 Water bridges: A:D.65 EDO.9: 5 residues within 4Å: Chain A: M.67, T.68, K.69, E.72, A.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69 Water bridges: A:K.69, A:K.69, A:K.69 EDO.13: 4 residues within 4Å: Chain B: I.14, F.116, A.127, G.128 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.128 Water bridges: B:N.12 EDO.14: 4 residues within 4Å: Chain B: L.92, R.95, C.111, G.112 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.111 Water bridges: B:R.95 EDO.15: 6 residues within 4Å: Chain B: M.67, G.97, S.98, Q.99, S.100 Ligands: FMN.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.98 EDO.16: 4 residues within 4Å: Chain B: T.86, A.88, D.177, K.178 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.86 EDO.17: 7 residues within 4Å: Chain A: D.54, F.55 Chain B: W.49, V.63, D.65, D.148 Ligands: UNL.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.148, B:D.148 Water bridges: B:D.65 EDO.18: 5 residues within 4Å: Chain B: M.67, T.68, K.69, E.72, A.102 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.69 Water bridges: B:K.69, B:K.69, B:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of FMN-binding domain of flavin reductases-like enzyme (YP_001049024.1) from Shewanella baltica OS155 at 1.50 A resolution. To be published

Release Date

2009-06-30

Peptides

Flavin reductase domain protein, FMN-binding: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Flavin reductase domain protein, FMN-binding