SMTL ID : 3hrp.1

Crystal structure of Structural genomics protein of unknown function (NP_812590.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: R.59, R.77, Q.78, L.79, Q.104, D.331, E.332, D.333, Y.337 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.332, A:D.333 Hydrogen bonds: A:R.77, A:Y.337 Water bridges: A:Q.78, A:Q.104, A:N.335, A:Y.337, A:K.349

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: P.17, V.18, K.92, E.93, V.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.18 EDO.3: 3 residues within 4Å: Chain A: Y.12, D.44, K.47 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.43, A:D.44, A:K.47, A:K.47 EDO.4: 7 residues within 4Å: Chain A: V.20, E.21, S.22, F.23, T.96, D.97, G.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.97, A:D.97, A:G.98 EDO.5: 2 residues within 4Å: Chain A: P.14, N.15 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.15 EDO.6: 1 residues within 4Å: Chain A: Y.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.197 EDO.7: 6 residues within 4Å: Chain A: K.47, V.48, K.49, I.88, D.90, G.91 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.49, A:K.49, A:G.91 EDO.8: 5 residues within 4Å: Chain A: A.56, L.79, D.351, L.353, D.354 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.335, A:N.335, A:D.351, A:D.354, A:D.354 EDO.9: 4 residues within 4Å: Chain A: E.21, K.37, G.38, N.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.38 Water bridges: A:K.37 EDO.10: 7 residues within 4Å: Chain A: D.227, E.228, Y.234, Y.274, S.279, F.281, P.296 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.228, A:Y.234, A:Y.234 Water bridges: A:S.279 EDO.11: 3 residues within 4Å: Chain A: S.22, F.23, V.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.23, A:F.23 EDO.12: 4 residues within 4Å: Chain A: V.178, T.179, K.180, K.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.182 Water bridges: A:K.182, A:K.182, A:K.182 EDO.13: 8 residues within 4Å: Chain A: E.191, G.192, H.194, S.215, F.217, S.218, G.219, K.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.192, A:K.220 Water bridges: A:K.220 EDO.14: 4 residues within 4Å: Chain A: G.170, F.171, K.172, E.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.170, A:K.172, A:E.191, A:E.191 Water bridges: A:W.190 EDO.15: 3 residues within 4Å: Chain A: G.192, T.193, T.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.193, A:T.195, A:T.195, A:T.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Structural genomics protein of unknown function (NP_812590.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution. To be Published

Release Date

2009-08-04

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein