SMTL ID : 3hto.1

the hemagglutinin structure of an avian H1N1 influenza A virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.1: 9 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, A.135, C.136, S.137, R.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.64, A:E.86, A:N.87, A:R.221, A:R.221, A:R.221 Water bridges: A:E.66, A:E.66, A:G.88 NAG-NDG.4: 9 residues within 4Å: Chain C: N.64, E.66, E.86, N.87, C.90, A.135, C.136, S.137, R.221 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.64, C:E.86, C:N.87, C:R.221, C:R.221, C:R.221 Water bridges: C:E.66, C:G.88 NAG-NDG.7: 9 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, A.135, C.136, S.137, R.221 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.64, E:E.86, E:N.87, E:R.221, E:R.221, E:R.221 Water bridges: E:E.66, E:G.88

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.3: 2 residues within 4Å: Chain A: K.22, N.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 NAG.5: 1 residues within 4Å: Chain C: N.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.11 NAG.6: 2 residues within 4Å: Chain C: K.22, N.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.23 NAG.8: 1 residues within 4Å: Chain E: N.11 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.11 NAG.9: 2 residues within 4Å: Chain E: K.22, N.23 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.23 Water bridges: E:T.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, T. et al., The hemagglutinin structure of an avian H1N1 influenza A virus. Virology (2009)

Release Date

2009-08-11

Peptides

Hemagglutinin: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin

Hemagglutinin HA2 chain

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