- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.3: 33 residues within 4Å:- Chain A: I.8, G.9, G.10, G.11, V.12, G.13, I.33, S.34, D.35, R.36, T.42, P.43, K.77, A.78, A.104, T.105, G.106, P.107, I.123, C.124, P.159, V.259, G.293, V.294, K.312, T.313, G.314, I.317, K.382
- Ligands: SO4.1, AUK.4, H2S.6, PS9.7
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:T.42, A:P.159, A:P.159
- Hydrogen bonds: A:G.10, A:G.10, A:V.12, A:G.13, A:S.34, A:D.35, A:R.36, A:R.36, A:T.42, A:T.42, A:A.78, A:A.78, A:V.294, A:G.314
- Water bridges: A:G.14, A:T.42, A:G.106, A:G.106, A:I.348
FAD.12: 33 residues within 4Å:- Chain B: I.8, G.9, G.10, G.11, V.12, G.13, I.33, S.34, D.35, R.36, T.42, P.43, F.45, K.77, A.78, A.104, T.105, G.106, I.123, C.124, P.159, V.259, G.293, V.294, K.312, T.313, G.314, I.317, K.382
- Ligands: SO4.10, AUK.13, H2S.15, PS9.16
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:F.45, B:I.123, B:P.159
- Hydrogen bonds: B:G.10, B:G.10, B:V.12, B:G.13, B:S.34, B:D.35, B:R.36, B:R.36, B:T.42, B:T.42, B:A.78, B:A.78, B:G.106, B:V.294, B:T.313, B:G.314, B:K.382
- Water bridges: B:G.11, B:G.14, B:M.315
FAD.22: 33 residues within 4Å:- Chain C: I.8, G.9, G.10, G.11, V.12, G.13, I.33, S.34, D.35, R.36, T.42, P.43, K.77, A.78, A.104, T.105, G.106, P.107, I.123, C.124, C.156, P.159, V.259, G.293, V.294, K.312, T.313, G.314, I.317, K.382
- Ligands: SO4.20, H2S.25, PS9.26
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:T.42, C:P.159
- Hydrogen bonds: C:G.10, C:V.12, C:G.13, C:D.35, C:R.36, C:R.36, C:T.42, C:T.42, C:A.78, C:A.78, C:V.294, C:K.312, C:G.314, C:K.382
- Water bridges: C:G.11, C:G.14, C:G.106, C:M.315, C:K.382
- 3 x AUK: 1-hydroxy-2-methyl-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]quinolin-4(1H)-one(Non-covalent)
AUK.4: 13 residues within 4Å:- Chain A: G.314, M.315, E.318, I.346, I.348, K.373, F.381, F.385, E.403, L.407, L.411
- Ligands: FAD.3, LMT.5
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:M.315, A:I.346, A:I.346, A:I.348, A:F.381, A:F.385, A:F.385, A:E.403, A:L.407, A:L.411, A:L.411
- Hydrogen bonds: A:E.318
- pi-Stacking: A:F.385
AUK.13: 14 residues within 4Å:- Chain B: G.314, M.315, E.318, I.346, F.357, K.373, F.381, F.385, E.403, L.407, F.410, L.411
- Ligands: FAD.12, LMT.14
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:I.346, B:I.346, B:F.357, B:F.381, B:L.407, B:F.410, B:L.411
- Hydrogen bonds: B:E.318
- Water bridges: B:T.313
- pi-Stacking: B:F.385, B:F.385
AUK.23: 12 residues within 4Å:- Chain C: G.314, M.315, E.318, I.346, I.371, F.381, F.385, E.403, V.406, L.407, L.411
- Ligands: LMT.24
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:I.371, C:F.381, C:V.406, C:L.407, C:L.411
- Hydrogen bonds: C:E.318
- Water bridges: C:I.346
- pi-Stacking: C:F.385, C:F.385
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.5: 7 residues within 4Å:- Chain A: K.373, W.377, F.381, V.406, F.410
- Ligands: SO4.2, AUK.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.381, A:V.406, A:F.410, A:F.410
- Hydrogen bonds: A:K.373
- Salt bridges: A:K.373
LMT.14: 6 residues within 4Å:- Chain B: K.373, M.374, W.377, F.410
- Ligands: SO4.11, AUK.13
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.410, B:F.410, B:F.410
- Hydrogen bonds: B:K.373, B:K.373, B:M.374
LMT.24: 6 residues within 4Å:- Chain C: K.373, W.377, V.406, F.410
- Ligands: SO4.21, AUK.23
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:V.406, C:F.410, C:F.410, C:F.410
- Hydrogen bonds: C:K.373
- Salt bridges: C:K.373
- 3 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.6: 2 residues within 4Å:- Chain A: C.124
- Ligands: FAD.3
No protein-ligand interaction detected (PLIP)H2S.15: 2 residues within 4Å:- Chain B: C.124
- Ligands: FAD.12
No protein-ligand interaction detected (PLIP)H2S.25: 2 residues within 4Å:- Chain C: C.124
- Ligands: FAD.22
No protein-ligand interaction detected (PLIP)- 3 x PS9: octathiocane(Non-covalent)
PS9.7: 8 residues within 4Å:- Chain A: C.156, F.157, G.158, P.159, F.194, P.311, C.347
- Ligands: FAD.3
No protein-ligand interaction detected (PLIP)PS9.16: 8 residues within 4Å:- Chain B: C.156, G.158, P.159, P.311, C.347, I.348, A.349
- Ligands: FAD.12
No protein-ligand interaction detected (PLIP)PS9.26: 8 residues within 4Å:- Chain C: C.156, G.158, F.194, P.311, T.313, C.347, A.349
- Ligands: FAD.22
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 3 x AUK: 1-hydroxy-2-methyl-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]quinolin-4(1H)-one(Non-covalent)
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 3 x H2S: HYDROSULFURIC ACID(Non-covalent)
- 3 x PS9: octathiocane(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marcia, M. et al., The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-07-14
- Peptides
- Sulfide-quinone reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
E