- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
XCC.3: 12 residues within 4Å:- Chain A: H.282, C.315, C.316, F.333, C.354, G.468, C.469, C.499, C.549, S.584, K.586
- Ligands: CYN.4
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.282, A:C.316, A:C.354, A:C.469, A:C.499, A:C.549, H2O.11
XCC.7: 12 residues within 4Å:- Chain B: H.282, C.315, C.316, F.333, C.354, G.468, C.469, C.499, C.549, S.584, K.586
- Ligands: CYN.8
7 PLIP interactions:6 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.282, B:C.316, B:C.354, B:C.469, B:C.499, B:C.549, H2O.20
- 2 x CYN: CYANIDE ION(Non-covalent)
CYN.4: 5 residues within 4Å:- Chain A: H.112, C.549, K.586, I.590
- Ligands: XCC.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.112
- Water bridges: A:V.550
CYN.8: 5 residues within 4Å:- Chain B: H.112, C.549, K.586, I.590
- Ligands: XCC.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.112
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: T.80, A.93, W.94, G.611, S.612, D.613, L.614
- Chain C: H.26
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.612, A:D.613, A:L.614
GOL.9: 7 residues within 4Å:- Chain B: A.93, W.94, G.611, S.612, D.613, L.614
- Chain D: H.26
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:S.612, B:D.613, B:L.614, D:H.26
- 2 x CU1: COPPER (I) ION(Non-covalent)
CU1.10: 6 residues within 4Å:- Chain C: C.508, C.594, C.596
- Ligands: SF4.11, NI.13, ACT.14
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.508, C:C.594, C:C.596
CU1.15: 6 residues within 4Å:- Chain D: C.508, C.594, C.596
- Ligands: SF4.16, NI.18, ACT.19
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.508, D:C.594, D:C.596
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.12: 5 residues within 4Å:- Chain C: F.327, E.330, N.411, G.413, L.416
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.330, C:G.413, C:L.416
NA.17: 5 residues within 4Å:- Chain D: F.327, E.330, N.411, G.413, L.416
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.330, D:G.413, D:L.416
- Water bridges: D:E.330
- 2 x NI: NICKEL (II) ION(Non-covalent)
NI.13: 7 residues within 4Å:- Chain C: L.526, C.594, G.595, C.596, F.597
- Ligands: CU1.10, ACT.14
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:C.594, C:C.596
NI.18: 7 residues within 4Å:- Chain D: L.526, C.594, G.595, C.596, F.597
- Ligands: CU1.15, ACT.19
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:C.594, D:C.596
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.14: 9 residues within 4Å:- Chain C: G.144, I.145, V.148, F.228, C.508, C.594, C.596
- Ligands: CU1.10, NI.13
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:V.148, C:F.228
ACT.19: 9 residues within 4Å:- Chain D: G.144, I.145, V.148, F.228, C.508, C.594, C.596
- Ligands: CU1.15, NI.18
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:V.148, D:F.228
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, Y. et al., Crystallographic snapshots of cyanide- and water-bound C-clusters from bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase. Biochemistry (2009)
- Release Date
- 2009-09-01
- Peptides
- Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit beta: AB
Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
OD
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
- 2 x CYN: CYANIDE ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, Y. et al., Crystallographic snapshots of cyanide- and water-bound C-clusters from bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase. Biochemistry (2009)
- Release Date
- 2009-09-01
- Peptides
- Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit beta: AB
Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
OD
P