SMTL ID : 3i2w.1

Crystal structure of EFC/F-BAR domain of Drosophila Syndapin/PACSIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: I.37, G.40, Y.41, S.44 Chain B: I.37, G.40, Y.41, S.44 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.37, A:G.40, A:Y.41, A:S.44, A:S.44, B:S.44, B:S.44 GOL.4: 1 residues within 4Å: Chain B: H.108 No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: I.56, E.57, G.59, E.61, E.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.56 Water bridges: A:E.61 NA.3: 1 residues within 4Å: Chain A: N.260 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.260 NA.5: 5 residues within 4Å: Chain B: I.56, E.57, G.59, E.61, E.66 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.56 Water bridges: B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edeling, M.A. et al., Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development. Plos One (2009)

Release Date

2010-03-02

Peptides

Syndapin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Syndapin