SMTL ID : 3i4g.1

CRYSTAL STRUCTURE OF A SUSD-LIKE CARBOHYDRATE BINDING PROTEIN (BF0978) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.35 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 6 residues within 4Å: Chain A: Y.42, R.66, R.67, H.269, W.278, E.354 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.67, A:R.67 Salt bridges: A:R.66, A:H.269, A:E.354, A:E.354

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: P.242, T.264, P.267, Y.365, F.366, E.367, I.372, N.379, G.380 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.367, A:E.367 Water bridges: A:L.381 EDO.3: 1 residues within 4Å: Chain A: N.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.373, A:N.373 EDO.4: 3 residues within 4Å: Chain A: D.286, V.467, Q.470 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.466, A:V.467 EDO.5: 3 residues within 4Å: Chain A: T.509, T.512, P.514 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.509 EDO.6: 6 residues within 4Å: Chain A: Y.32, R.33, D.46, W.48, R.98, I.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.46, A:R.98 Water bridges: A:Y.32, A:Y.32, A:S.35 EDO.7: 1 residues within 4Å: Chain A: P.72 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: K.336, Y.341, E.347 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.336, A:E.347 EDO.9: 6 residues within 4Å: Chain A: W.92, Y.96, P.144, A.155, V.158, L.526 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD-like carbohydrate binding protein BF1063 from Bacteroides fragilis YCH46 (YP_210668.1) from Bacteroides fragilis NCTC 9343 at 1.35 A resolution. To be published

Release Date

2009-07-21

Peptides

SusD-like carbohydrate binding protein BF1063: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD-like carbohydrate binding protein BF1063