SMTL ID : 3i6v.1

Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x LYS: LYSINE(Non-covalent)

LYS.1: 12 residues within 4Å: Chain A: E.12, Y.15, W.53, G.71, M.72, S.73, R.78, Q.112, T.115, I.116, Q.117, P.134 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:Y.15, A:W.53 Hydrogen bonds: A:E.12, A:S.73, A:S.73, A:Q.112, A:I.116, A:Q.117 Water bridges: A:E.12, A:Q.117 Salt bridges: A:R.78

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.79, I.82, D.83, E.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.79

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: I.74, T.75, D.76, D.79, F.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.75, A:D.76 Water bridges: A:F.84, A:F.84, A:F.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonanno, J.B. et al., Crystal structure of a periplasmic His/Glu/Gln/Arg/opine family-binding protein from Silicibacter pomeroyi in complex with lysine. To be Published

Release Date

2009-07-21

Peptides

periplasmic His/Glu/Gln/Arg/opine family-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

periplasmic His/Glu/Gln/Arg/opine family-binding protein