SMTL ID : 3i7d.1

Crystal structure of sugar phosphate isomerase from a cupin superfamily SPO2919 from Silicibacter pomeroyi (YP_168127.1) from SILICIBACTER POMEROYI DSS-3 at 2.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: M.132, D.133, Q.157 Ligand excluded by PLIP

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.2: 4 residues within 4Å: Chain A: Y.18, H.60, H.62, Y.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.129, A:Y.129, A:Y.129 CAC.4: 6 residues within 4Å: Chain B: V.17, Y.18, H.60, H.62, Y.129, F.143 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.18, B:Y.18, B:Y.18

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: S.56, S.57, H.60, E.67, H.103, Q.104, F.105 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.56, A:S.57 Salt bridges: A:H.60, A:H.103

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain B: I.14, D.27, G.28, R.29, S.30, E.51 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.28, B:S.30, B:E.51 Water bridges: B:R.29, B:E.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of sugar phosphate isomerase from a cupin superfamily SPO2919 from Silicibacter pomeroyi (YP_168127.1) from SILICIBACTER POMEROYI DSS-3 at 2.30 A resolution. To be published

Release Date

2009-07-21

Peptides

sugar phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

sugar phosphate isomerase