SMTL ID : 3i97.1 (1 other biounit)

B1 domain of human Neuropilin-1 bound with small molecule EG00229

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x 8DR: (S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid(Non-covalent)

8DR.1: 12 residues within 4Å: Chain A: Y.28, S.29, T.47, D.51, S.77, E.79, T.80, K.82, Y.84, G.145, I.146 Ligands: GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.29, A:T.47, A:S.77, A:T.80, A:Y.84, A:Y.84, A:I.146 Salt bridges: A:D.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: S.29, T.30, N.31 Ligands: 8DR.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.30, A:N.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jarvis, A. et al., Small molecule inhibitors of the neuropilin-1 vascular endothelial growth factor A (VEGF-A) interaction. J.Med.Chem. (2010)

Release Date

2010-03-02

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1

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