SMTL ID : 3icf.1

Structure of Protein serine/threonine phosphatase from Saccharomyces cerevisiae with similarity to human phosphatase PP5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: D.71, D.100, N.132, H.181, H.256 Ligands: FE.2, PO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.100, A:H.181, A:H.256 FE.2: 5 residues within 4Å: Chain A: D.71, H.73, D.100 Ligands: FE.1, PO4.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.71, A:H.73, A:D.100, H2O.2 FE.6: 7 residues within 4Å: Chain B: D.71, D.100, N.132, H.181, H.256 Ligands: FE.7, PO4.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.100, B:H.181, B:H.256 FE.7: 5 residues within 4Å: Chain B: D.71, H.73, D.100 Ligands: FE.6, PO4.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.71, B:H.73, B:D.100, H2O.3

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: H.73, D.100, R.104, N.132, H.133, H.181, R.229, H.256 Ligands: FE.1, FE.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.132 Water bridges: A:H.256 Salt bridges: A:H.73, A:R.104, A:H.133, A:R.229, A:H.256 PO4.8: 11 residues within 4Å: Chain B: H.73, D.100, R.104, N.132, H.133, H.181, R.229, H.256, Y.280 Ligands: FE.6, FE.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.132, B:H.256 Salt bridges: B:H.73, B:R.104, B:H.133, B:R.229, B:H.256

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: S.41, D.44, M.159, Q.162 Chain B: S.41, D.44, M.159, Q.162 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.44, B:Q.162, A:D.44, A:Q.162 EDO.9: 3 residues within 4Å: Chain B: P.51, V.54, E.55 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.55, B:K.196, B:K.196

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: S.41, H.42, T.45 Chain B: S.41, H.42, T.45 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.45, A:T.45, A:T.45, B:T.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singer, A.U. et al., Structure of Protein serine/threonine phosphatase from Saccharomyces cerevisiae with similarity to human phosphatase PP5. To be Published

Release Date

2009-08-25

Peptides

Serine/threonine-protein phosphatase T: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein phosphatase T