- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI9: 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: D.98, D.102
- Ligands: NI9.1, MG.4
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.98, A:D.102, H2O.8, H2O.8
MG.3: 2 residues within 4Å:- Chain A: D.250
- Ligands: NI9.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.250, H2O.1, H2O.8
MG.4: 5 residues within 4Å:- Chain A: D.98, D.102, D.170
- Ligands: NI9.1, MG.2
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.98, A:D.102, H2O.1, H2O.8, H2O.10
MG.9: 4 residues within 4Å:- Chain B: D.98, D.102
- Ligands: NI9.8, MG.11
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.98, B:D.102, H2O.19, H2O.19
MG.10: 2 residues within 4Å:- Chain B: D.250
- Ligands: NI9.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.250, H2O.11, H2O.19
MG.11: 5 residues within 4Å:- Chain B: D.98, D.102, D.170
- Ligands: NI9.8, MG.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.98, B:D.102, H2O.11, H2O.19, H2O.21
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: F.17, Q.21, K.25, H.141
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Water bridges: B:K.158
- Hydrogen bonds: A:Q.21
- Salt bridges: A:K.25, A:H.141
SO4.6: 8 residues within 4Å:- Chain A: G.47, K.48, Y.49, F.50, R.51, Q.91, R.108
- Ligands: IPE.7
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:K.48, A:Y.49, A:F.50, A:Q.91
- Water bridges: A:R.51, A:R.51, A:R.108, A:R.108
- Salt bridges: A:K.48, A:R.51, A:R.108
SO4.12: 4 residues within 4Å:- Chain B: F.17, Q.21, K.25, H.141
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Water bridges: A:K.158
- Hydrogen bonds: B:Q.21
- Salt bridges: B:K.25, B:H.141
SO4.13: 8 residues within 4Å:- Chain B: G.47, K.48, Y.49, F.50, R.51, Q.91, R.108
- Ligands: IPE.14
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:K.48, B:Y.49, B:F.50, B:Q.91
- Water bridges: B:R.51, B:R.51, B:R.108, B:R.108
- Salt bridges: B:K.48, B:R.51, B:R.108
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
IPE.7: 13 residues within 4Å:- Chain A: G.47, K.48, R.51, Q.91, R.108, T.208, Y.211, T.212, F.246, Q.247, D.250
- Ligands: NI9.1, SO4.6
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:T.208, A:F.246, A:D.250
- Hydrogen bonds: A:K.48, A:R.51, A:Q.91
- Water bridges: A:Y.49, A:R.360
- Salt bridges: A:K.48, A:K.48, A:R.51, A:R.108, A:K.264
IPE.14: 13 residues within 4Å:- Chain B: G.47, K.48, R.51, Q.91, R.108, T.208, Y.211, T.212, F.246, Q.247, D.250
- Ligands: NI9.8, SO4.13
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:T.208, B:F.246, B:D.250
- Hydrogen bonds: B:K.48, B:R.51, B:Q.91
- Water bridges: B:Y.49, B:R.360
- Salt bridges: B:K.48, B:K.48, B:R.51, B:R.108, B:K.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, C.H. et al., Binding of nitrogen-containing bisphosphonates (N-BPs) to the Trypanosoma cruzi farnesyl diphosphate synthase homodimer. Proteins (2010)
- Release Date
- 2010-02-09
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NI9: 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, C.H. et al., Binding of nitrogen-containing bisphosphonates (N-BPs) to the Trypanosoma cruzi farnesyl diphosphate synthase homodimer. Proteins (2010)
- Release Date
- 2010-02-09
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A